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Bromine in PDB 7gdq: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Lor-Nor-30067BB9-15 (Mpro-X11204)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Lor-Nor-30067BB9-15 (Mpro-X11204)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Lor-Nor-30067BB9-15 (Mpro-X11204):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Lor-Nor-30067BB9-15 (Mpro-X11204), PDB code: 7gdq was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.21 / 1.72
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.3, 53.012, 44.472, 90, 102.96, 90
R / Rfree (%) 18.4 / 21.2

Bromine Binding Sites:

The binding sites of Bromine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Lor-Nor-30067BB9-15 (Mpro-X11204) (pdb code 7gdq). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Lor-Nor-30067BB9-15 (Mpro-X11204), PDB code: 7gdq:

Bromine binding site 1 out of 1 in 7gdq

Go back to Bromine Binding Sites List in 7gdq
Bromine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Lor-Nor-30067BB9-15 (Mpro-X11204)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Lor-Nor-30067BB9-15 (Mpro-X11204) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br406

b:38.4
occ:0.60
BR A:MWN406 0.0 38.4 0.6
C8 A:MWN406 1.9 36.7 0.6
C7 A:MWN406 2.8 35.4 0.6
C9 A:MWN406 2.8 36.2 0.6
CE A:MET49 3.3 41.5 1.0
C6 A:MWN406 4.1 34.2 0.6
C2 A:MWN406 4.1 35.9 0.6
O A:HIS164 4.6 20.6 1.0
CG A:MET49 4.7 38.9 1.0
C3 A:MWN406 4.7 34.7 0.6
SD A:MET49 4.7 44.0 1.0
O A:HOH704 4.8 45.9 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Thu Jul 11 03:56:53 2024

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