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Bromine in PDB 7gdy: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Lor-Nor-30067BB9-6 (Mpro-X11258)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Lor-Nor-30067BB9-6 (Mpro-X11258)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Lor-Nor-30067BB9-6 (Mpro-X11258):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Lor-Nor-30067BB9-6 (Mpro-X11258), PDB code: 7gdy was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.21 / 1.61
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.332, 53.267, 44.382, 90, 103.03, 90
R / Rfree (%) 19.6 / 25.9

Bromine Binding Sites:

The binding sites of Bromine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Lor-Nor-30067BB9-6 (Mpro-X11258) (pdb code 7gdy). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Lor-Nor-30067BB9-6 (Mpro-X11258), PDB code: 7gdy:

Bromine binding site 1 out of 1 in 7gdy

Go back to Bromine Binding Sites List in 7gdy
Bromine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Lor-Nor-30067BB9-6 (Mpro-X11258)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Lor-Nor-30067BB9-6 (Mpro-X11258) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br405

b:38.8
occ:0.66
BR A:N2X405 0.0 38.8 0.7
C11 A:N2X405 1.9 32.9 0.7
C12 A:N2X405 2.8 31.4 0.7
C10 A:N2X405 2.8 32.0 0.7
O A:PHE140 3.1 25.7 1.0
C A:PHE140 3.5 25.5 1.0
CB A:PHE140 3.6 23.5 1.0
CB A:GLU166 3.7 29.7 1.0
O A:LEU141 3.8 27.5 1.0
C A:LEU141 3.9 28.0 1.0
OG A:SER144 3.9 19.5 1.0
NE2 A:HIS163 3.9 18.7 1.0
OE1 A:GLU166 3.9 33.8 1.0
CD A:GLU166 4.0 32.2 1.0
N A:LEU141 4.0 26.9 1.0
CA A:LEU141 4.1 27.6 1.0
C7 A:N2X405 4.1 29.8 0.7
C9 A:N2X405 4.1 31.0 0.7
OE2 A:GLU166 4.2 31.7 1.0
CA A:PHE140 4.2 24.2 1.0
CG A:GLU166 4.4 31.5 1.0
N A:ASN142 4.5 28.3 1.0
CD2 A:HIS172 4.5 20.6 1.0
NE2 A:HIS172 4.5 20.5 1.0
C8 A:N2X405 4.6 30.1 0.7
CD2 A:HIS163 4.7 19.0 1.0
CA A:GLU166 4.8 28.3 1.0
CG A:PHE140 4.8 23.0 1.0
CE1 A:HIS163 4.9 19.0 1.0
N A:GLU166 4.9 27.8 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Thu Jul 11 03:57:05 2024

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