Bromine in PDB 7o1h: Hybrid-2R Quadruplex-Duplex with (-P-P-L) Topology and 3 Syn Residues

The binding sites of Bromine atom in the Hybrid-2R Quadruplex-Duplex with (-P-P-L) Topology and 3 Syn Residues (pdb code 7o1h). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Hybrid-2R Quadruplex-Duplex with (-P-P-L) Topology and 3 Syn Residues, PDB code: 7o1h:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Hybrid-2R Quadruplex-Duplex with (-P-P-L) Topology and 3 Syn Residues


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Hybrid-2R Quadruplex-Duplex with (-P-P-L) Topology and 3 Syn Residues within 5.0Å range: probe atom residue distance (Å) B Occ A:Br26 b:0.0 occ:1.00 BR A:BGM26 0.0 0.0 1.0 C8 A:BGM26 1.9 0.0 1.0 N7 A:BGM26 2.8 0.0 1.0 H1' A:BGM26 2.8 0.0 1.0 N9 A:BGM26 2.9 0.0 1.0 H2 A:DA15 3.3 0.0 1.0 O4' A:DG27 3.4 0.0 1.0 C1' A:BGM26 3.4 0.0 1.0 H21 A:DG14 3.6 0.0 1.0 C2 A:DA15 3.8 0.0 1.0 H5' A:DG27 3.8 0.0 1.0 H22 A:DG14 3.8 0.0 1.0 C5 A:BGM26 4.0 0.0 1.0 N3 A:DA15 4.0 0.0 1.0 C4 A:BGM26 4.0 0.0 1.0 N2 A:DG14 4.1 0.0 1.0 C1' A:DG27 4.3 0.0 1.0 O4' A:BGM26 4.3 0.0 1.0 H4' A:DG27 4.3 0.0 1.0 C4' A:DG27 4.3 0.0 1.0 N9 A:DG27 4.3 0.0 1.0 H1' A:DG27 4.4 0.0 1.0 N1 A:DA15 4.5 0.0 1.0 H2' A:BGM26 4.6 0.0 1.0 C5' A:DG27 4.6 0.0 1.0 C4 A:DG27 4.6 0.0 1.0 C2' A:BGM26 4.6 0.0 1.0 N3 A:DG27 4.8 0.0 1.0 O2 A:DT25 4.8 0.0 1.0 C8 A:DG27 4.8 0.0 1.0 H4' A:BGM26 5.0 0.0 1.0

Bromine binding site 2 out of 2 in the Hybrid-2R Quadruplex-Duplex with (-P-P-L) Topology and 3 Syn Residues


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Hybrid-2R Quadruplex-Duplex with (-P-P-L) Topology and 3 Syn Residues within 5.0Å range: probe atom residue distance (Å) B Occ A:Br28 b:0.0 occ:1.00 BR A:BGM28 0.0 0.0 1.0 C8 A:BGM28 1.9 0.0 1.0 N7 A:BGM28 2.8 0.0 1.0 N9 A:BGM28 2.9 0.0 1.0 H1' A:BGM28 2.9 0.0 1.0 H62 A:DA31 3.0 0.0 1.0 C1' A:BGM28 3.4 0.0 1.0 N6 A:DA31 3.6 0.0 1.0 H2' A:BGM28 3.6 0.0 1.0 H21 A:DG12 3.7 0.0 1.0 H2' A:DT29 3.7 0.0 1.0 H2'' A:DT29 3.8 0.0 1.0 C6 A:DT29 3.8 0.0 1.0 C5 A:DT29 3.8 0.0 1.0 N1 A:DT29 3.9 0.0 1.0 C4 A:DT29 3.9 0.0 1.0 H22 A:DG12 3.9 0.0 1.0 N3 A:DT29 3.9 0.0 1.0 C5 A:BGM28 3.9 0.0 1.0 C2 A:DT29 4.0 0.0 1.0 C2' A:BGM28 4.0 0.0 1.0 H8 A:DA30 4.0 0.0 1.0 C4 A:BGM28 4.0 0.0 1.0 N7 A:DA31 4.1 0.0 1.0 H61 A:DA31 4.1 0.0 1.0 C2' A:DT29 4.2 0.0 1.0 N2 A:DG12 4.2 0.0 1.0 H22 A:DG13 4.2 0.0 1.0 H2'' A:BGM28 4.2 0.0 1.0 H72 A:DT29 4.2 0.0 1.0 C6 A:DA31 4.2 0.0 1.0 H6 A:DT29 4.3 0.0 1.0 H61 A:DA3 4.3 0.0 1.0 C5 A:DA31 4.4 0.0 1.0 C8 A:DA30 4.4 0.0 1.0 H3 A:DT29 4.4 0.0 1.0 N7 A:DA30 4.5 0.0 1.0 O4 A:DT29 4.5 0.0 1.0 O2 A:DT29 4.6 0.0 1.0 H62 A:DA3 4.6 0.0 1.0 C7 A:DT29 4.6 0.0 1.0 N2 A:DG13 4.6 0.0 1.0 N6 A:DA3 4.6 0.0 1.0 C1' A:DT29 4.6 0.0 1.0 O4' A:BGM28 4.7 0.0 1.0 H21 A:DG13 5.0 0.0 1.0

S.Mohr, J.Jana, Y.M.Vianney, K.Weisz. Expanding the Topological Landscape By A G-Column Flip of A Parallel G-Quadruplex. Chemistry 2021.
ISSN: ISSN 0947-6539
PubMed: 33955615
DOI: 10.1002/CHEM.202101181