Atomistry » Bromine » PDB 7mlq-7oxq » 7or4
Atomistry »
  Bromine »
    PDB 7mlq-7oxq »
      7or4 »

Bromine in PDB 7or4: Crystal Structure of DPP8 in Complex with A 4-Oxo-B-Lactam Based Inhibitor, B142

Enzymatic activity of Crystal Structure of DPP8 in Complex with A 4-Oxo-B-Lactam Based Inhibitor, B142

All present enzymatic activity of Crystal Structure of DPP8 in Complex with A 4-Oxo-B-Lactam Based Inhibitor, B142:
3.4.14.5;

Protein crystallography data

The structure of Crystal Structure of DPP8 in Complex with A 4-Oxo-B-Lactam Based Inhibitor, B142, PDB code: 7or4 was solved by B.Ross, R.Huber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.74 / 2.44
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 149.443, 149.443, 269.388, 90, 90, 120
R / Rfree (%) 21.5 / 25.3

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of DPP8 in Complex with A 4-Oxo-B-Lactam Based Inhibitor, B142 (pdb code 7or4). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of DPP8 in Complex with A 4-Oxo-B-Lactam Based Inhibitor, B142, PDB code: 7or4:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 7or4

Go back to Bromine Binding Sites List in 7or4
Bromine binding site 1 out of 2 in the Crystal Structure of DPP8 in Complex with A 4-Oxo-B-Lactam Based Inhibitor, B142


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of DPP8 in Complex with A 4-Oxo-B-Lactam Based Inhibitor, B142 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br902

b:95.1
occ:1.00
BR1 B:2YI902 0.0 95.1 1.0
C33 B:2YI902 1.9 75.3 1.0
C32 B:2YI902 2.8 74.0 1.0
C34 B:2YI902 2.9 64.1 1.0
CD2 B:LEU880 3.5 67.5 1.0
CB B:ARG688 3.7 60.1 1.0
CD1 B:LEU881 4.0 75.0 1.0
C31 B:2YI902 4.1 74.9 1.0
CG B:LEU880 4.2 58.9 1.0
CA B:GLU877 4.2 53.1 1.0
C35 B:2YI902 4.2 72.0 1.0
CG B:ARG688 4.2 53.2 1.0
O B:GLU877 4.3 52.8 1.0
CB B:GLU877 4.4 60.3 1.0
CG B:GLU877 4.4 61.1 1.0
CB B:LEU880 4.5 53.8 1.0
C30 B:2YI902 4.7 72.8 1.0
C B:GLU877 4.8 56.4 1.0
CD B:ARG688 4.8 57.8 1.0
O B:ARG688 4.8 63.8 1.0
CD2 B:LEU692 4.9 58.5 1.0
CA B:ARG688 4.9 57.5 1.0
OH B:TYR876 4.9 56.0 1.0

Bromine binding site 2 out of 2 in 7or4

Go back to Bromine Binding Sites List in 7or4
Bromine binding site 2 out of 2 in the Crystal Structure of DPP8 in Complex with A 4-Oxo-B-Lactam Based Inhibitor, B142


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of DPP8 in Complex with A 4-Oxo-B-Lactam Based Inhibitor, B142 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br902

b:97.9
occ:1.00
BR1 A:2YI902 0.0 97.9 1.0
C33 A:2YI902 1.9 86.4 1.0
C32 A:2YI902 2.9 74.1 1.0
C34 A:2YI902 2.9 83.0 1.0
CD1 A:LEU881 3.3 70.6 1.0
CD2 A:LEU880 3.6 59.1 1.0
CB A:ARG688 4.0 62.1 1.0
CA A:GLU877 4.0 55.9 1.0
O A:GLU877 4.1 53.0 1.0
CB A:GLU877 4.1 59.2 1.0
C31 A:2YI902 4.2 73.9 1.0
C35 A:2YI902 4.2 71.4 1.0
CG A:GLU877 4.3 63.9 1.0
CG A:LEU880 4.3 61.0 1.0
CB A:LEU880 4.4 59.4 1.0
CG A:ARG688 4.5 69.1 1.0
C A:GLU877 4.5 54.3 1.0
C30 A:2YI902 4.7 64.8 1.0
O A:ARG688 4.8 49.1 1.0
CD A:ARG688 4.8 71.3 1.0
CG A:LEU881 4.8 70.9 1.0
CD A:GLU877 4.9 68.1 1.0

Reference:

L.Fehr, L.A.R.Carvalho, B.H.Ross, K.Lum, A.C.Vieira, R.Kiefersauer, R.Geiss-Friedlander, M.Kaiser, T.Rodrigues, S.D.Lucas, B.F.Cravatt, R.Huber, R.Moreira. Discovery and Development of 4-Oxo-Beta-Lactams As Novel Inhibitors of Dipeptidyl Peptidases 8 and 9 To Be Published.
Page generated: Thu Jul 11 04:17:24 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy