Bromine in PDB 7pj9: Crystal Structure of YTHDC1 with Compound DHU_DC1_232

The structure of Crystal Structure of YTHDC1 with Compound DHU_DC1_232, PDB code: 7pj9 was solved by R.K.Bedi, D.Huang, A.Caflisch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.51 / 1.72
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	39.61, 103.25, 42.19, 90, 106.2, 90
R / Rfree (%)	19.3 / 22.7

The binding sites of Bromine atom in the Crystal Structure of YTHDC1 with Compound DHU_DC1_232 (pdb code 7pj9). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of YTHDC1 with Compound DHU_DC1_232, PDB code: 7pj9:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Crystal Structure of YTHDC1 with Compound DHU_DC1_232


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of YTHDC1 with Compound DHU_DC1_232 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br601 b:48.9 occ:1.00 BR A:7RI601 0.0 48.9 1.0 C12 A:7RI601 1.9 43.4 1.0 C09 A:7RI601 2.9 38.7 1.0 C11 A:7RI601 2.9 40.5 1.0 CD A:PRO431 3.3 49.5 1.0 CG A:PRO431 3.3 50.4 1.0 CE A:MET438 3.4 49.5 1.0 SD A:MET438 3.8 61.9 1.0 C08 A:7RI601 4.2 38.4 1.0 SD A:MET434 4.2 64.6 1.0 C10 A:7RI601 4.2 38.5 1.0 O A:HOH733 4.4 40.2 1.0 CE A:MET434 4.4 52.2 1.0 OD1 A:ASN363 4.5 42.8 1.0 N A:PRO431 4.6 49.0 1.0 CB A:PRO431 4.7 48.7 1.0 C07 A:7RI601 4.7 37.2 1.0 CD1 A:LEU430 4.9 42.6 1.0 CB A:MET434 4.9 58.6 1.0 CB A:LEU430 5.0 43.5 1.0

Bromine binding site 2 out of 2 in the Crystal Structure of YTHDC1 with Compound DHU_DC1_232


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of YTHDC1 with Compound DHU_DC1_232 within 5.0Å range: probe atom residue distance (Å) B Occ B:Br601 b:62.5 occ:1.00 BR B:7RI601 0.0 62.5 1.0 C12 B:7RI601 1.9 46.9 1.0 C09 B:7RI601 2.9 41.3 1.0 C11 B:7RI601 2.9 39.9 1.0 C08 B:7RI601 4.2 37.5 1.0 C10 B:7RI601 4.2 38.7 1.0 C07 B:7RI601 4.7 37.4 1.0 ND2 B:ASN363 4.9 45.4 1.0

R.K.Bedi, D.Huang, A.Caflisch. Crystal Structure of YTHDC1 with Compound DHU_DC1_232 To Be Published.