Bromine in PDB 7plz: Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin)

The structure of Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin) also contains other interesting chemical elements:

Magnesium

(Mg)

3 atoms

The binding sites of Bromine atom in the Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin) (pdb code 7plz). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 3 binding sites of Bromine where determined in the Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin), PDB code: 7plz:
Jump to Bromine binding site number: 1; 2; 3;

Bromine binding site 1 out of 3 in the Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin) within 5.0Å range: probe atom residue distance (Å) B Occ C:Br404 b:34.5 occ:1.00 BR C:9UE404 0.0 34.5 1.0 C28 C:9UE404 1.9 34.5 1.0 N3 C:9UE404 2.8 34.5 1.0 C21 C:9UE404 2.9 34.5 1.0 CD2 F:HIC73 3.3 31.0 1.0 C19 C:9UE404 3.3 34.5 1.0 C20 C:9UE404 3.5 34.5 1.0 CG F:HIC73 3.8 31.0 1.0 N1 C:9UE404 3.9 34.5 1.0 C27 C:9UE404 4.0 34.5 1.0 CB F:HIC73 4.0 31.0 1.0 C22 C:9UE404 4.1 34.5 1.0 OD2 F:ASP179 4.1 29.8 1.0 NE2 F:HIC73 4.2 31.0 1.0 C8 C:9UE404 4.3 34.5 1.0 C18 C:9UE404 4.5 34.5 1.0 CZ F:HIC73 4.7 31.0 1.0 CG F:ASP179 4.8 29.8 1.0 C9 C:9UE404 4.8 34.5 1.0 ND1 F:HIC73 4.9 31.0 1.0

Bromine binding site 2 out of 3 in the Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin) within 5.0Å range: probe atom residue distance (Å) B Occ C:Br405 b:40.8 occ:1.00 BR C:9UE405 0.0 40.8 1.0 C28 C:9UE405 1.9 40.8 1.0 N3 C:9UE405 2.8 40.8 1.0 C21 C:9UE405 2.9 40.8 1.0 CD2 G:HIC73 3.3 31.9 1.0 C19 C:9UE405 3.4 40.8 1.0 C20 C:9UE405 3.6 40.8 1.0 CG G:HIC73 3.9 31.9 1.0 C27 C:9UE405 4.0 40.8 1.0 N1 C:9UE405 4.0 40.8 1.0 C22 C:9UE405 4.1 40.8 1.0 OD2 G:ASP179 4.1 32.7 1.0 NE2 G:HIC73 4.1 31.9 1.0 CB G:HIC73 4.1 31.9 1.0 C8 C:9UE405 4.4 40.8 1.0 CZ G:HIC73 4.5 31.9 1.0 CG G:ASP179 4.8 32.7 1.0 C18 C:9UE405 4.8 40.8 1.0 ND1 G:HIC73 4.9 31.9 1.0 C9 C:9UE405 5.0 40.8 1.0 CE1 G:HIC73 5.0 31.9 1.0

Bromine binding site 3 out of 3 in the Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin) within 5.0Å range: probe atom residue distance (Å) B Occ G:Br401 b:30.7 occ:1.00 BR G:9UE401 0.0 30.7 1.0 C28 G:9UE401 1.9 30.7 1.0 N3 G:9UE401 2.8 30.7 1.0 C21 G:9UE401 2.9 30.7 1.0 CD2 C:HIC73 3.2 29.0 1.0 C19 G:9UE401 3.3 30.7 1.0 C20 G:9UE401 3.6 30.7 1.0 CG C:HIC73 3.8 29.0 1.0 OD2 C:ASP179 3.9 27.3 1.0 N1 G:9UE401 3.9 30.7 1.0 NE2 C:HIC73 4.0 29.0 1.0 C27 G:9UE401 4.0 30.7 1.0 C22 G:9UE401 4.1 30.7 1.0 CB C:HIC73 4.1 29.0 1.0 C8 G:9UE401 4.4 30.7 1.0 C18 G:9UE401 4.4 30.7 1.0 CZ C:HIC73 4.4 29.0 1.0 CG C:ASP179 4.5 27.3 1.0 C9 G:9UE401 4.7 30.7 1.0 ND1 C:HIC73 4.8 29.0 1.0 CE1 C:HIC73 4.8 29.0 1.0 OD1 C:ASP179 4.9 27.3 1.0

S.Pospich, H.L.Sweeney, A.Houdusse, S.Raunser. High-Resolution Structures of the Actomyosin-V Complex in Three Nucleotide States Provide Insights Into the Force Generation Mechanism. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34812732
DOI: 10.7554/ELIFE.73724