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Bromine in PDB 8ejp: Crystal Structure of the Homeodomain of Platypus Sdux in Complex with Dna Containing 5-Bromouracil

Protein crystallography data

The structure of Crystal Structure of the Homeodomain of Platypus Sdux in Complex with Dna Containing 5-Bromouracil, PDB code: 8ejp was solved by L.L.Yin, K.Shi, H.Aihara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 59.68 / 2.17
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 74.499, 74.499, 99.688, 90, 90, 90
R / Rfree (%) 23.8 / 25.9

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of the Homeodomain of Platypus Sdux in Complex with Dna Containing 5-Bromouracil (pdb code 8ejp). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of the Homeodomain of Platypus Sdux in Complex with Dna Containing 5-Bromouracil, PDB code: 8ejp:

Bromine binding site 1 out of 1 in 8ejp

Go back to Bromine Binding Sites List in 8ejp
Bromine binding site 1 out of 1 in the Crystal Structure of the Homeodomain of Platypus Sdux in Complex with Dna Containing 5-Bromouracil


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the Homeodomain of Platypus Sdux in Complex with Dna Containing 5-Bromouracil within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Br3

b:110.8
occ:0.46
BR D:BRU3 0.0 110.8 0.5
C5 D:BRU3 1.9 100.9 1.0
C4 D:BRU3 2.8 102.0 1.0
C6 D:BRU3 2.8 97.4 1.0
O4 D:BRU3 3.0 112.9 1.0
O4 D:DT4 3.4 93.2 1.0
C2' D:DG2 3.9 108.0 1.0
C4 D:DT4 4.0 91.6 1.0
OP2 D:BRU3 4.1 120.0 1.0
N3 D:BRU3 4.1 94.5 1.0
N1 D:BRU3 4.2 95.4 1.0
N6 C:DA14 4.4 97.7 1.0
C8 D:DG2 4.5 104.9 1.0
C7 D:DT4 4.5 93.6 1.0
C5 D:DT4 4.6 91.5 1.0
C2 D:BRU3 4.6 93.9 1.0
N9 D:DG2 4.7 104.1 1.0
C1' D:DG2 4.7 110.2 1.0
N3 D:DT4 4.7 89.7 1.0
O5' D:BRU3 4.8 115.6 1.0

Reference:

L.L.Yin, K.Shi, H.Aihara. Crystal Structure of the Double Homeodomain of DUX4 in Complex with Dna To Be Published.
Page generated: Thu Jul 11 05:06:48 2024

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