Bromine in PDB 8j0s: Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)

Enzymatic activity of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)

All present enzymatic activity of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq):
7.1.2.2;

Other elements in 8j0s:

The structure of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) also contains other interesting chemical elements:

Magnesium (Mg) 5 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) (pdb code 8j0s). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 7 binding sites of Bromine where determined in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq), PDB code: 8j0s:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7;

Bromine binding site 1 out of 7 in 8j0s

Go back to Bromine Binding Sites List in 8j0s
Bromine binding site 1 out of 7 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Br600

b:21.5
occ:1.00
 BR 1:BQ1600 0.0 21.5 1.0
C35 1:BQ1600 1.9 21.5 1.0
C33 1:BQ1600 2.9 21.5 1.0
C36 1:BQ1600 2.9 21.5 1.0
CD2 1:PHE65 4.2 15.1 1.0
C22 1:BQ1600 4.2 21.5 1.0
CA 1:ALA62 4.2 12.9 1.0
C34 1:BQ1600 4.2 21.5 1.0
C32 9:BQ1600 4.2 31.5 1.0
CB 1:ALA62 4.4 12.9 1.0
CB 1:PHE65 4.6 15.1 1.0
CG 1:PHE65 4.7 15.1 1.0
O 1:ALA62 4.7 12.9 1.0
C27 9:BQ1600 4.7 31.5 1.0
C24 1:BQ1600 4.7 21.5 1.0
C 1:ALA62 4.9 12.9 1.0
CE2 1:PHE65 4.9 15.1 1.0

Bromine binding site 2 out of 7 in 8j0s

Go back to Bromine Binding Sites List in 8j0s
Bromine binding site 2 out of 7 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) within 5.0Å range:
probe atom residue distance (Å) B Occ
4:Br600

b:20.4
occ:1.00
 BR 4:BQ1600 0.0 20.4 1.0
C35 4:BQ1600 1.9 20.4 1.0
C36 4:BQ1600 2.9 20.4 1.0
C33 4:BQ1600 2.9 20.4 1.0
CE3 a:TRP216 3.4 23.5 1.0
CZ3 a:TRP216 3.4 23.5 1.0
CB a:PHE219 3.8 21.4 1.0
CA 4:ALA62 4.0 11.7 1.0
CD2 4:PHE65 4.0 11.2 1.0
CG a:PHE219 4.1 21.4 1.0
CB 4:PHE65 4.1 11.2 1.0
C34 4:BQ1600 4.2 20.4 1.0
C22 4:BQ1600 4.2 20.4 1.0
CG 4:PHE65 4.2 11.2 1.0
CB 4:ALA62 4.3 11.7 1.0
CD1 a:PHE219 4.5 21.4 1.0
CD2 a:TRP216 4.7 23.5 1.0
C24 4:BQ1600 4.7 20.4 1.0
CD2 a:PHE219 4.7 21.4 1.0
CH2 a:TRP216 4.8 23.5 1.0
O 4:ALA62 4.8 11.7 1.0
O a:ILE215 4.8 27.1 1.0
N 4:ALA62 4.8 11.7 1.0
CE2 4:PHE65 4.8 11.2 1.0
CA a:TRP216 4.8 23.5 1.0
C 4:ALA62 4.9 11.7 1.0
CG2 a:ILE215 4.9 27.1 1.0

Bromine binding site 3 out of 7 in 8j0s

Go back to Bromine Binding Sites List in 8j0s
Bromine binding site 3 out of 7 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) within 5.0Å range:
probe atom residue distance (Å) B Occ
5:Br600

b:23.2
occ:1.00
 BR 5:BQ1600 0.0 23.2 1.0
C35 5:BQ1600 1.9 23.2 1.0
C33 5:BQ1600 2.9 23.2 1.0
C36 5:BQ1600 2.9 23.2 1.0
CA 5:ALA62 3.9 10.6 1.0
CB 5:ALA62 4.0 10.6 1.0
C34 5:BQ1600 4.2 23.2 1.0
C22 5:BQ1600 4.2 23.2 1.0
C32 4:BQ1600 4.2 20.4 1.0
CD2 5:PHE65 4.3 13.3 1.0
CB 5:PHE65 4.4 13.3 1.0
CG 5:PHE65 4.6 13.3 1.0
C24 5:BQ1600 4.7 23.2 1.0
O 5:ALA62 4.7 10.6 1.0
C27 4:BQ1600 4.7 20.4 1.0
N 5:ALA62 4.8 10.6 1.0
C30 4:BQ1600 4.8 20.4 1.0
C 5:ALA62 4.8 10.6 1.0

Bromine binding site 4 out of 7 in 8j0s

Go back to Bromine Binding Sites List in 8j0s
Bromine binding site 4 out of 7 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) within 5.0Å range:
probe atom residue distance (Å) B Occ
6:Br600

b:25.2
occ:1.00
 BR 6:BQ1600 0.0 25.2 1.0
C35 6:BQ1600 1.9 25.2 1.0
C36 6:BQ1600 2.9 25.2 1.0
C33 6:BQ1600 2.9 25.2 1.0
CA 6:ALA62 3.9 11.6 1.0
CB 6:ALA62 4.0 11.6 1.0
C34 6:BQ1600 4.2 25.2 1.0
C22 6:BQ1600 4.2 25.2 1.0
CD2 6:PHE65 4.3 14.5 1.0
C32 5:BQ1600 4.5 23.2 1.0
CB 6:PHE65 4.6 14.5 1.0
O 6:ALA62 4.6 11.6 1.0
C24 6:BQ1600 4.7 25.2 1.0
CG 6:PHE65 4.7 14.5 1.0
C 6:ALA62 4.8 11.6 1.0
C27 5:BQ1600 4.9 23.2 1.0
N 6:ALA62 4.9 11.6 1.0

Bromine binding site 5 out of 7 in 8j0s

Go back to Bromine Binding Sites List in 8j0s
Bromine binding site 5 out of 7 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) within 5.0Å range:
probe atom residue distance (Å) B Occ
7:Br600

b:29.6
occ:1.00
 BR 7:BQ1600 0.0 29.6 1.0
C35 7:BQ1600 1.9 29.6 1.0
C36 7:BQ1600 2.9 29.6 1.0
C33 7:BQ1600 2.9 29.6 1.0
CD2 7:PHE65 4.0 15.6 1.0
CA 7:ALA62 4.1 14.4 1.0
CB 7:ALA62 4.1 14.4 1.0
C32 6:BQ1600 4.1 25.2 1.0
C34 7:BQ1600 4.2 29.6 1.0
C22 7:BQ1600 4.2 29.6 1.0
C27 6:BQ1600 4.5 25.2 1.0
O 7:ALA62 4.7 14.4 1.0
C24 7:BQ1600 4.7 29.6 1.0
CB 7:PHE65 4.7 15.6 1.0
CE2 7:PHE65 4.7 15.6 1.0
CG 7:PHE65 4.7 15.6 1.0
C30 6:BQ1600 4.8 25.2 1.0
C 7:ALA62 4.8 14.4 1.0

Bromine binding site 6 out of 7 in 8j0s

Go back to Bromine Binding Sites List in 8j0s
Bromine binding site 6 out of 7 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) within 5.0Å range:
probe atom residue distance (Å) B Occ
8:Br600

b:29.5
occ:1.00
 BR 8:BQ1600 0.0 29.5 1.0
C35 8:BQ1600 1.9 29.5 1.0
C33 8:BQ1600 2.9 29.5 1.0
C36 8:BQ1600 2.9 29.5 1.0
CA 8:ALA62 3.9 14.7 1.0
CD2 8:PHE65 4.0 16.1 1.0
CB 8:ALA62 4.0 14.7 1.0
C22 8:BQ1600 4.2 29.5 1.0
C34 8:BQ1600 4.2 29.5 1.0
C32 7:BQ1600 4.2 29.6 1.0
O 8:ALA62 4.5 14.7 1.0
CB 8:PHE65 4.6 16.1 1.0
C 8:ALA62 4.7 14.7 1.0
C24 8:BQ1600 4.7 29.5 1.0
CG 8:PHE65 4.7 16.1 1.0
C27 7:BQ1600 4.7 29.6 1.0
CE2 8:PHE65 4.7 16.1 1.0
C30 7:BQ1600 4.8 29.6 1.0
N 8:ALA62 4.9 14.7 1.0

Bromine binding site 7 out of 7 in 8j0s

Go back to Bromine Binding Sites List in 8j0s
Bromine binding site 7 out of 7 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) within 5.0Å range:
probe atom residue distance (Å) B Occ
9:Br600

b:31.5
occ:1.00
 BR 9:BQ1600 0.0 31.5 1.0
C35 9:BQ1600 1.9 31.5 1.0
C36 9:BQ1600 2.9 31.5 1.0
C33 9:BQ1600 2.9 31.5 1.0
C32 8:BQ1600 4.0 29.5 1.0
CB 9:ALA62 4.2 16.2 1.0
C34 9:BQ1600 4.2 31.5 1.0
C22 9:BQ1600 4.2 31.5 1.0
CA 9:ALA62 4.2 16.2 1.0
CD2 9:PHE65 4.4 16.5 1.0
C27 8:BQ1600 4.5 29.5 1.0
C30 8:BQ1600 4.6 29.5 1.0
C24 9:BQ1600 4.7 31.5 1.0
O 9:ALA62 4.8 16.2 1.0
CB 9:PHE65 4.9 16.5 1.0
CG 9:PHE65 5.0 16.5 1.0
C 9:ALA62 5.0 16.2 1.0

Reference:

Y.Zhang, Y.Lai, F.Liu, Z.Rao, H.Gong. Structure of Mycobacterium Tuberculosis Atp Synthase To Be Published.
Page generated: Thu Jul 11 05:18:19 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy