Bromine in PDB 8pos: Crystal Structure of Wolbachia Leucyl-Trna Synthetase Editing Domain Bound to CMPD9-Amp Adduct

All present enzymatic activity of Crystal Structure of Wolbachia Leucyl-Trna Synthetase Editing Domain Bound to CMPD9-Amp Adduct:
6.1.1.4;

The structure of Crystal Structure of Wolbachia Leucyl-Trna Synthetase Editing Domain Bound to CMPD9-Amp Adduct, PDB code: 8pos was solved by A.Palencia, G.Hoffmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.51 / 2.14
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	52.147, 52.147, 273.558, 90, 90, 90
R / Rfree (%)	21.2 / 25.3

The binding sites of Bromine atom in the Crystal Structure of Wolbachia Leucyl-Trna Synthetase Editing Domain Bound to CMPD9-Amp Adduct (pdb code 8pos). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of Wolbachia Leucyl-Trna Synthetase Editing Domain Bound to CMPD9-Amp Adduct, PDB code: 8pos:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Crystal Structure of Wolbachia Leucyl-Trna Synthetase Editing Domain Bound to CMPD9-Amp Adduct


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Wolbachia Leucyl-Trna Synthetase Editing Domain Bound to CMPD9-Amp Adduct within 5.0Å range: probe atom residue distance (Å) B Occ A:Br501 b:54.7 occ:0.75 BR A:7RZ501 0.0 54.7 0.8 C13 A:7RZ501 1.9 54.9 0.8 C14 A:7RZ501 2.8 55.4 0.8 C11 A:7RZ501 2.9 54.1 0.8 C10 A:7RZ501 3.4 53.2 0.8 C17 A:7RZ501 3.5 52.0 0.8 OG1 A:THR246 3.6 40.7 1.0 CB A:CYS243 4.0 52.6 1.0 CB A:CYS324 4.0 38.3 1.0 CG2 A:THR246 4.0 40.7 1.0 C15 A:7RZ501 4.1 55.9 0.8 C12 A:7RZ501 4.2 54.7 0.8 O A:HIS327 4.2 31.2 1.0 CB A:THR246 4.2 40.7 1.0 CB A:HIS327 4.3 29.6 1.0 SG A:CYS243 4.3 58.8 1.0 CB A:ASP328 4.3 36.6 1.0 C A:HIS327 4.4 31.7 1.0 SG A:CYS324 4.4 43.2 1.0 N18 A:7RZ501 4.5 51.3 0.8 C16 A:7RZ501 4.7 56.3 0.8 O1 A:7RZ501 4.7 53.3 0.8 O A:CYS324 4.7 35.1 1.0 OD2 A:ASP328 4.8 45.2 1.0 N A:ASP328 4.8 32.9 1.0 CA A:HIS327 4.9 30.2 1.0

Bromine binding site 2 out of 2 in the Crystal Structure of Wolbachia Leucyl-Trna Synthetase Editing Domain Bound to CMPD9-Amp Adduct


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of Wolbachia Leucyl-Trna Synthetase Editing Domain Bound to CMPD9-Amp Adduct within 5.0Å range: probe atom residue distance (Å) B Occ B:Br501 b:58.6 occ:0.84 BR B:7RZ501 0.0 58.6 0.8 C13 B:7RZ501 1.9 57.1 0.8 C14 B:7RZ501 2.8 57.3 0.8 C11 B:7RZ501 2.9 55.2 0.8 OG1 B:THR246 3.3 34.5 1.0 C10 B:7RZ501 3.4 53.6 0.8 C17 B:7RZ501 3.4 52.4 0.8 CB B:CYS324 3.7 32.7 1.0 CG2 B:THR246 4.0 33.9 1.0 CB B:THR246 4.0 33.8 1.0 CB B:CYS243 4.1 43.5 1.0 N18 B:7RZ501 4.1 51.7 0.8 C15 B:7RZ501 4.1 57.5 0.8 C12 B:7RZ501 4.2 55.2 0.8 O B:HIS327 4.2 32.6 1.0 CB B:ASP328 4.2 38.6 1.0 SG B:CYS324 4.2 35.8 1.0 CB B:HIS327 4.2 32.2 1.0 C B:HIS327 4.3 33.2 1.0 SG B:CYS243 4.5 50.8 1.0 O B:CYS324 4.5 33.2 1.0 C16 B:7RZ501 4.7 57.7 0.8 OD2 B:ASP328 4.7 50.4 1.0 N B:ASP328 4.7 34.4 1.0 O1 B:7RZ501 4.7 53.1 0.8 CA B:HIS327 4.8 32.1 1.0 CA B:CYS324 5.0 32.2 1.0 CA B:ASP328 5.0 35.7 1.0 CG B:ASP328 5.0 46.6 1.0

A.Palencia, G.Hoffmann, M.Lukarska, R.Clare, S.Ward, M.A.Taylor, M.Ringkjobing Jensen. Targeting A Microbiota Wolbachian Aminoacyl-Trna Synthetase to Block Its Pathogenic Host Science Advances 2024.