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Bromine in PDB 8sa7: Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form)

Enzymatic activity of Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form)

All present enzymatic activity of Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form):
4.4.1.8;

Protein crystallography data

The structure of Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form), PDB code: 8sa7 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.44 / 1.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 87.291, 131.297, 82.686, 90, 104.26, 90
R / Rfree (%) 14 / 15.8

Other elements in 8sa7:

The structure of Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form) also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Bromine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Bromine atom in the Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form) (pdb code 8sa7). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 11 binding sites of Bromine where determined in the Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form), PDB code: 8sa7:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Bromine binding site 1 out of 11 in 8sa7

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Bromine binding site 1 out of 11 in the Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br402

b:112.0
occ:1.00
 O A:HOH772 2.7 31.9 1.0
O A:HOH592 3.9 31.6 1.0
CD2 A:TYR56 4.5 14.3 1.0
CG A:TYR56 4.7 16.5 1.0
CE2 A:TYR56 4.8 16.0 1.0
NH2 A:ARG58 4.9 17.6 1.0

Bromine binding site 2 out of 11 in 8sa7

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Bromine binding site 2 out of 11 in the Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br403

b:131.0
occ:1.00
 O A:HOH697 3.7 30.6 1.0
O A:HOH923 3.9 35.9 1.0
O A:HOH909 3.9 38.5 1.0
O A:HOH717 4.0 41.6 1.0
NE1 A:TRP276 4.3 32.2 1.0
O A:HOH932 4.3 48.8 1.0
O A:HOH805 4.3 53.2 1.0
CZ2 A:TRP276 4.4 24.1 1.0
CB A:LEU384 4.5 23.9 1.0
CE2 A:TRP276 4.6 29.1 1.0
O A:LEU384 4.7 22.6 1.0
CB A:ALA388 4.8 23.2 1.0
C A:LEU384 4.8 20.8 1.0
N A:ALA385 5.0 21.8 1.0

Bromine binding site 3 out of 11 in 8sa7

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Bromine binding site 3 out of 11 in the Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br404

b:69.7
occ:1.00
 O A:HOH501 3.4 27.9 1.0
NZ A:LYS42 3.9 85.2 1.0
CG1 A:VAL39 4.0 28.3 1.0
CG2 A:VAL39 4.3 30.9 1.0
CE A:LYS42 4.4 56.3 1.0
CB A:VAL39 4.8 26.5 1.0

Bromine binding site 4 out of 11 in 8sa7

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Bromine binding site 4 out of 11 in the Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br405

b:125.6
occ:1.00
 CG A:ARG264 3.7 23.4 1.0
NH1 A:ARG264 3.9 26.6 1.0
O A:HOH741 3.9 24.9 1.0
CD A:ARG264 4.3 23.2 1.0
O A:GLY260 4.3 19.7 1.0
CD2 A:LEU193 4.4 20.4 1.0
O A:HOH677 4.4 28.4 1.0
CD2 A:LEU6 4.7 45.7 1.0
CA A:GLY260 4.7 19.7 1.0
CB A:LEU263 4.9 16.9 1.0
CZ A:ARG264 4.9 25.0 1.0
N A:ARG264 4.9 16.9 1.0
C A:GLY260 5.0 19.7 1.0

Bromine binding site 5 out of 11 in 8sa7

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Bromine binding site 5 out of 11 in the Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br406

b:161.7
occ:1.00
 BR A:BR407 3.7 134.1 1.0
O A:HOH567 3.9 23.4 1.0
O A:HOH855 3.9 33.7 1.0
O A:HOH926 4.1 36.5 1.0
O A:HOH854 4.1 43.8 1.0
O A:HOH890 4.5 38.0 1.0
O A:HOH584 4.6 25.0 1.0
O A:HOH919 4.8 45.2 1.0

Bromine binding site 6 out of 11 in 8sa7

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Bromine binding site 6 out of 11 in the Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br407

b:134.1
occ:1.00
 O A:HOH890 3.0 38.0 1.0
BR A:BR406 3.7 161.7 1.0
C A:PHE199 3.8 21.8 1.0
O A:PHE199 3.8 25.3 1.0
N A:GLY200 3.9 19.2 1.0
O A:ASP198 4.0 24.7 1.0
CA A:GLY200 4.0 21.6 1.0
CA A:PHE199 4.5 20.6 1.0
O A:HOH584 4.5 25.0 1.0
O A:HOH855 4.7 33.7 1.0
C A:ASP198 4.8 22.6 1.0
O A:HOH926 4.8 36.5 1.0
O A:HOH688 4.8 29.0 1.0

Bromine binding site 7 out of 11 in 8sa7

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Bromine binding site 7 out of 11 in the Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br408

b:117.5
occ:1.00
 O A:HOH790 2.9 44.9 1.0
CB A:LEU6 4.1 36.2 1.0
OG A:SER305 4.1 25.1 1.0
CB A:SER305 4.2 21.9 1.0
CD2 A:LEU6 4.2 45.7 1.0
CG A:LEU6 4.8 31.1 1.0

Bromine binding site 8 out of 11 in 8sa7

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Bromine binding site 8 out of 11 in the Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br409

b:117.4
occ:1.00
 O A:HOH915 3.0 47.6 1.0
O A:ASN142 3.8 26.2 1.0
O A:ILE144 4.0 24.1 1.0
CG A:GLN145 4.3 23.2 1.0
C A:ILE144 4.6 22.9 1.0
CA A:GLN145 4.7 21.8 1.0
O A:HOH558 4.7 34.4 1.0
C A:LEU143 4.7 26.8 1.0
O A:LEU143 4.7 25.2 1.0
O A:HOH529 4.7 37.0 1.0
C A:ASN142 4.8 25.0 1.0
N A:GLN145 4.9 21.7 1.0
CA A:LEU143 4.9 22.4 1.0
CB A:GLN145 5.0 23.7 1.0

Bromine binding site 9 out of 11 in 8sa7

Go back to Bromine Binding Sites List in 8sa7
Bromine binding site 9 out of 11 in the Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br403

b:117.9
occ:1.00
 O B:HOH682 2.8 44.0 1.0
CE2 B:PHE55 4.6 25.6 1.0
O B:HOH768 4.7 49.5 1.0
CZ B:PHE55 4.8 27.0 1.0

Bromine binding site 10 out of 11 in 8sa7

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Bromine binding site 10 out of 11 in the Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 10 of Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br404

b:80.5
occ:1.00
 O B:HOH673 3.3 29.6 1.0
NZ B:LYS42 3.8 68.2 1.0
CG1 B:VAL39 4.0 29.8 1.0
CG2 B:VAL39 4.3 26.4 1.0
CD B:LYS42 4.3 32.7 1.0
CE B:LYS42 4.5 52.1 1.0
CB B:VAL39 4.7 23.8 1.0

Reference:

L.Liu, S.Lovell, K.P.Battaile, A.Cooper. Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes (C2 Form) To Be Published.
Page generated: Thu Jul 11 05:31:43 2024

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