Bromine in PDB 8ux7: Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man

Protein crystallography data

The structure of Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man, PDB code: 8ux7 was solved by M.V.Oliveira, G.De Sloover, V.J.S.Osterne, V.R.Pinto-Junior, J.C.Sacramento-Neto, E.J.M.Van Damme, K.S.Nascimento, B.S.Cavada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.66 / 2.20
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 89.35, 109.414, 126.364, 90, 90, 90
R / Rfree (%) 20.1 / 24.8

Other elements in 8ux7:

The structure of Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man also contains other interesting chemical elements:

Potassium (K) 1 atom
Chlorine (Cl) 2 atoms
Manganese (Mn) 2 atoms
Calcium (Ca) 2 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man (pdb code 8ux7). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man, PDB code: 8ux7:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 8ux7

Go back to Bromine Binding Sites List in 8ux7
Bromine binding site 1 out of 2 in the Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br303

b:75.5
occ:1.00
BR A:XMM303 0.0 75.5 1.0
C13 A:XMM303 1.9 76.2 1.0
C10 A:XMM303 2.8 56.9 1.0
C14 A:XMM303 2.9 65.4 1.0
CL A:XMM303 3.1 54.1 1.0
C8 A:XMM303 4.1 63.1 1.0
C12 A:XMM303 4.1 70.5 1.0
C9 A:XMM303 4.6 68.8 1.0

Bromine binding site 2 out of 2 in 8ux7

Go back to Bromine Binding Sites List in 8ux7
Bromine binding site 2 out of 2 in the Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br303

b:84.7
occ:1.00
BR B:XMM303 0.0 84.7 1.0
C13 B:XMM303 1.9 91.7 1.0
C10 B:XMM303 2.8 75.4 1.0
C14 B:XMM303 2.9 79.8 1.0
CL B:XMM303 3.1 69.8 1.0
C8 B:XMM303 4.1 77.7 1.0
C12 B:XMM303 4.2 76.9 1.0
C9 B:XMM303 4.6 82.3 1.0

Reference:

M.V.Oliveira, G.De Sloover, V.J.S.Osterne, V.R.Pinto-Junior, J.C.Sacramento-Neto, E.J.M.Van Damme, K.S.Nascimento, B.S.Cavada. Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man To Be Published.
Page generated: Thu Jul 11 05:36:54 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy