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Bromine in PDB 8ux7: Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man

Protein crystallography data

The structure of Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man, PDB code: 8ux7 was solved by M.V.Oliveira, G.De Sloover, V.J.S.Osterne, V.R.Pinto-Junior, J.C.Sacramento-Neto, E.J.M.Van Damme, K.S.Nascimento, B.S.Cavada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.66 / 2.20
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 89.35, 109.414, 126.364, 90, 90, 90
R / Rfree (%) 20.1 / 24.8

Other elements in 8ux7:

The structure of Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man also contains other interesting chemical elements:

Potassium (K) 1 atom
Chlorine (Cl) 2 atoms
Manganese (Mn) 2 atoms
Calcium (Ca) 2 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man (pdb code 8ux7). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man, PDB code: 8ux7:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 8ux7

Go back to Bromine Binding Sites List in 8ux7
Bromine binding site 1 out of 2 in the Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br303

b:75.5
occ:1.00
BR A:XMM303 0.0 75.5 1.0
C13 A:XMM303 1.9 76.2 1.0
C10 A:XMM303 2.8 56.9 1.0
C14 A:XMM303 2.9 65.4 1.0
CL A:XMM303 3.1 54.1 1.0
C8 A:XMM303 4.1 63.1 1.0
C12 A:XMM303 4.1 70.5 1.0
C9 A:XMM303 4.6 68.8 1.0

Bromine binding site 2 out of 2 in 8ux7

Go back to Bromine Binding Sites List in 8ux7
Bromine binding site 2 out of 2 in the Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br303

b:84.7
occ:1.00
BR B:XMM303 0.0 84.7 1.0
C13 B:XMM303 1.9 91.7 1.0
C10 B:XMM303 2.8 75.4 1.0
C14 B:XMM303 2.9 79.8 1.0
CL B:XMM303 3.1 69.8 1.0
C8 B:XMM303 4.1 77.7 1.0
C12 B:XMM303 4.2 76.9 1.0
C9 B:XMM303 4.6 82.3 1.0

Reference:

M.V.Oliveira, G.De Sloover, V.J.S.Osterne, V.R.Pinto-Junior, J.C.Sacramento-Neto, E.J.M.Van Damme, K.S.Nascimento, B.S.Cavada. Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man To Be Published.
Page generated: Thu Dec 28 01:05:00 2023

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