Bromine in PDB 8zlo: F0502B-Bound E46K Alpha-Synuclein Fibril

Other elements in 8zlo:

The structure of F0502B-Bound E46K Alpha-Synuclein Fibril also contains other interesting chemical elements:

Fluorine (F) 10 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the F0502B-Bound E46K Alpha-Synuclein Fibril (pdb code 8zlo). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 10 binding sites of Bromine where determined in the F0502B-Bound E46K Alpha-Synuclein Fibril, PDB code: 8zlo:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Bromine binding site 1 out of 10 in 8zlo

Go back to Bromine Binding Sites List in 8zlo
Bromine binding site 1 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Br101

b:105.5
occ:1.00
 BR2 E:1KI101 0.0 105.5 1.0
C21 E:1KI101 1.9 105.5 1.0
C20 E:1KI101 2.9 105.5 1.0
C23 E:1KI101 2.9 105.5 1.0
CE1 A:HIS50 2.9 194.9 1.0
O24 E:1KI101 3.1 105.5 1.0
CE1 I:HIS50 3.2 194.9 1.0
ND1 A:HIS50 3.3 194.9 1.0
NE2 I:HIS50 3.7 194.9 1.0
NE2 A:HIS50 3.8 194.9 1.0
C19 E:1KI101 4.2 105.5 1.0
ND1 I:HIS50 4.2 194.9 1.0
C25 E:1KI101 4.2 105.5 1.0
CG A:HIS50 4.3 194.9 1.0
CD2 A:HIS50 4.5 194.9 1.0
C26 E:1KI101 4.7 105.5 1.0
BR2 J:1KI101 4.7 105.5 1.0
CD2 I:HIS50 4.8 194.9 1.0
O A:GLY51 4.9 179.5 1.0
C20 I:1KI103 4.9 105.5 1.0
C21 I:1KI103 4.9 105.5 1.0
O I:HIS50 4.9 194.9 1.0
BR2 I:1KI103 4.9 105.5 1.0

Bromine binding site 2 out of 10 in 8zlo

Go back to Bromine Binding Sites List in 8zlo
Bromine binding site 2 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Br101

b:105.5
occ:1.00
 BR2 F:1KI101 0.0 105.5 1.0
C21 F:1KI101 1.9 105.5 1.0
C20 F:1KI101 2.9 105.5 1.0
C23 F:1KI101 2.9 105.5 1.0
CE1 C:HIS50 2.9 194.9 1.0
O24 F:1KI101 3.1 105.5 1.0
CE1 G:HIS50 3.2 194.9 1.0
ND1 C:HIS50 3.3 194.9 1.0
NE2 G:HIS50 3.7 194.9 1.0
NE2 C:HIS50 3.8 194.9 1.0
C19 F:1KI101 4.2 105.5 1.0
ND1 G:HIS50 4.2 194.9 1.0
C25 F:1KI101 4.2 105.5 1.0
CG C:HIS50 4.3 194.9 1.0
CD2 C:HIS50 4.5 194.9 1.0
C26 F:1KI101 4.7 105.5 1.0
BR2 H:1KI101 4.7 105.5 1.0
CD2 G:HIS50 4.8 194.9 1.0
O C:GLY51 4.9 179.5 1.0
C20 G:1KI103 4.9 105.5 1.0
C21 G:1KI103 4.9 105.5 1.0
O G:HIS50 4.9 194.9 1.0
BR2 G:1KI103 4.9 105.5 1.0

Bromine binding site 3 out of 10 in 8zlo

Go back to Bromine Binding Sites List in 8zlo
Bromine binding site 3 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Br101

b:61.8
occ:1.00
 BR2 G:1KI101 0.0 61.8 1.0
C21 G:1KI101 1.9 61.8 1.0
O H:GLY86 2.3 161.9 1.0
C23 G:1KI101 2.9 61.8 1.0
C20 G:1KI101 2.9 61.8 1.0
C H:GLY86 3.0 161.9 1.0
O24 G:1KI101 3.0 61.8 1.0
CA H:GLY86 3.6 161.9 1.0
CD1 H:ILE88 3.7 146.1 1.0
O O:GLY86 3.9 161.9 1.0
N H:SER87 4.0 154.3 1.0
N H:GLY86 4.1 161.9 1.0
C25 G:1KI101 4.2 61.8 1.0
C19 G:1KI101 4.2 61.8 1.0
CD1 O:ILE88 4.4 146.1 1.0
CA H:SER87 4.6 154.3 1.0
C26 G:1KI101 4.7 61.8 1.0
C H:SER87 4.8 154.3 1.0
N H:ILE88 4.8 146.1 1.0
CG1 H:ILE88 4.9 146.1 1.0

Bromine binding site 4 out of 10 in 8zlo

Go back to Bromine Binding Sites List in 8zlo
Bromine binding site 4 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Br102

b:97.6
occ:1.00
 BR2 G:1KI102 0.0 97.6 1.0
C21 G:1KI102 1.9 97.6 1.0
C20 G:1KI102 2.9 97.6 1.0
C23 G:1KI102 2.9 97.6 1.0
O24 G:1KI102 3.1 97.6 1.0
CA O:GLY47 3.5 202.0 1.0
C O:GLY47 3.9 202.0 1.0
CG1 H:VAL55 4.0 156.3 1.0
O O:GLY47 4.1 202.0 1.0
N O:GLY47 4.1 202.0 1.0
CG2 H:VAL55 4.2 156.3 1.0
C25 G:1KI102 4.2 97.6 1.0
C19 G:1KI102 4.2 97.6 1.0
CB H:VAL55 4.7 156.3 1.0
C26 G:1KI102 4.7 97.6 1.0
N O:VAL48 4.8 197.3 1.0
CG1 O:VAL55 4.8 156.3 1.0
CB O:VAL55 4.9 156.3 1.0
CG1 O:VAL49 4.9 192.3 1.0
CA H:GLY47 4.9 202.0 1.0
CG2 O:VAL55 4.9 156.3 1.0
C O:LYS46 4.9 203.1 1.0

Bromine binding site 5 out of 10 in 8zlo

Go back to Bromine Binding Sites List in 8zlo
Bromine binding site 5 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Br103

b:105.5
occ:1.00
 BR2 G:1KI103 0.0 105.5 1.0
C21 G:1KI103 1.9 105.5 1.0
CE1 D:HIS50 2.8 194.9 1.0
C20 G:1KI103 2.9 105.5 1.0
C23 G:1KI103 2.9 105.5 1.0
O24 G:1KI103 3.1 105.5 1.0
CE1 C:HIS50 3.1 194.9 1.0
ND1 D:HIS50 3.2 194.9 1.0
NE2 C:HIS50 3.5 194.9 1.0
NE2 D:HIS50 3.6 194.9 1.0
ND1 C:HIS50 4.1 194.9 1.0
CG D:HIS50 4.2 194.9 1.0
C19 G:1KI103 4.2 105.5 1.0
C25 G:1KI103 4.2 105.5 1.0
CD2 D:HIS50 4.4 194.9 1.0
CD2 C:HIS50 4.6 194.9 1.0
C26 G:1KI103 4.7 105.5 1.0
O C:HIS50 4.8 194.9 1.0
O D:GLY51 4.9 179.5 1.0
BR2 F:1KI101 4.9 105.5 1.0
CG C:HIS50 4.9 194.9 1.0

Bromine binding site 6 out of 10 in 8zlo

Go back to Bromine Binding Sites List in 8zlo
Bromine binding site 6 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Br101

b:105.5
occ:1.00
 BR2 H:1KI101 0.0 105.5 1.0
C21 H:1KI101 1.9 105.5 1.0
C20 H:1KI101 2.9 105.5 1.0
CE1 G:HIS50 2.9 194.9 1.0
C23 H:1KI101 2.9 105.5 1.0
O24 H:1KI101 3.1 105.5 1.0
ND1 G:HIS50 3.4 194.9 1.0
CE1 F:HIS50 3.5 194.9 1.0
NE2 G:HIS50 3.7 194.9 1.0
NE2 F:HIS50 3.9 194.9 1.0
C19 H:1KI101 4.2 105.5 1.0
C25 H:1KI101 4.2 105.5 1.0
CG G:HIS50 4.4 194.9 1.0
ND1 F:HIS50 4.5 194.9 1.0
CD2 G:HIS50 4.6 194.9 1.0
C26 H:1KI101 4.7 105.5 1.0
BR2 F:1KI101 4.7 105.5 1.0
C21 F:1KI101 4.8 105.5 1.0
C20 F:1KI101 4.8 105.5 1.0
O G:GLY51 5.0 179.5 1.0

Bromine binding site 7 out of 10 in 8zlo

Go back to Bromine Binding Sites List in 8zlo
Bromine binding site 7 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Br101

b:61.8
occ:1.00
 BR2 I:1KI101 0.0 61.8 1.0
C21 I:1KI101 1.9 61.8 1.0
O J:GLY86 2.3 161.9 1.0
C23 I:1KI101 2.9 61.8 1.0
C20 I:1KI101 2.9 61.8 1.0
C J:GLY86 3.0 161.9 1.0
O24 I:1KI101 3.0 61.8 1.0
CA J:GLY86 3.6 161.9 1.0
CD1 J:ILE88 3.7 146.1 1.0
O T:GLY86 3.9 161.9 1.0
N J:SER87 4.0 154.3 1.0
N J:GLY86 4.1 161.9 1.0
C25 I:1KI101 4.2 61.8 1.0
C19 I:1KI101 4.2 61.8 1.0
CD1 T:ILE88 4.4 146.1 1.0
CA J:SER87 4.6 154.3 1.0
C26 I:1KI101 4.7 61.8 1.0
C J:SER87 4.8 154.3 1.0
N J:ILE88 4.8 146.1 1.0
CG1 J:ILE88 4.9 146.1 1.0

Bromine binding site 8 out of 10 in 8zlo

Go back to Bromine Binding Sites List in 8zlo
Bromine binding site 8 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Br102

b:97.6
occ:1.00
 BR2 I:1KI102 0.0 97.6 1.0
C21 I:1KI102 1.9 97.6 1.0
C20 I:1KI102 2.9 97.6 1.0
C23 I:1KI102 2.9 97.6 1.0
O24 I:1KI102 3.1 97.6 1.0
CA T:GLY47 3.5 202.0 1.0
C T:GLY47 3.9 202.0 1.0
CG1 J:VAL55 4.0 156.3 1.0
O T:GLY47 4.1 202.0 1.0
N T:GLY47 4.1 202.0 1.0
CG2 J:VAL55 4.2 156.3 1.0
C25 I:1KI102 4.2 97.6 1.0
C19 I:1KI102 4.2 97.6 1.0
CB J:VAL55 4.7 156.3 1.0
C26 I:1KI102 4.7 97.6 1.0
N T:VAL48 4.8 197.3 1.0
CG1 T:VAL55 4.8 156.3 1.0
CB T:VAL55 4.9 156.3 1.0
CG1 T:VAL49 4.9 192.3 1.0
CA J:GLY47 4.9 202.0 1.0
CG2 T:VAL55 4.9 156.3 1.0
C T:LYS46 4.9 203.1 1.0

Bromine binding site 9 out of 10 in 8zlo

Go back to Bromine Binding Sites List in 8zlo
Bromine binding site 9 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Br103

b:105.5
occ:1.00
 BR2 I:1KI103 0.0 105.5 1.0
C21 I:1KI103 1.9 105.5 1.0
CE1 B:HIS50 2.8 194.9 1.0
C20 I:1KI103 2.9 105.5 1.0
C23 I:1KI103 2.9 105.5 1.0
O24 I:1KI103 3.1 105.5 1.0
CE1 A:HIS50 3.1 194.9 1.0
ND1 B:HIS50 3.2 194.9 1.0
NE2 A:HIS50 3.5 194.9 1.0
NE2 B:HIS50 3.6 194.9 1.0
ND1 A:HIS50 4.1 194.9 1.0
CG B:HIS50 4.2 194.9 1.0
C19 I:1KI103 4.2 105.5 1.0
C25 I:1KI103 4.2 105.5 1.0
CD2 B:HIS50 4.4 194.9 1.0
CD2 A:HIS50 4.6 194.9 1.0
C26 I:1KI103 4.7 105.5 1.0
O A:HIS50 4.8 194.9 1.0
O B:GLY51 4.9 179.5 1.0
BR2 E:1KI101 4.9 105.5 1.0
CG A:HIS50 4.9 194.9 1.0

Bromine binding site 10 out of 10 in 8zlo

Go back to Bromine Binding Sites List in 8zlo
Bromine binding site 10 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 10 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Br101

b:105.5
occ:1.00
 BR2 J:1KI101 0.0 105.5 1.0
C21 J:1KI101 1.9 105.5 1.0
C20 J:1KI101 2.9 105.5 1.0
CE1 I:HIS50 2.9 194.9 1.0
C23 J:1KI101 2.9 105.5 1.0
O24 J:1KI101 3.1 105.5 1.0
ND1 I:HIS50 3.4 194.9 1.0
CE1 E:HIS50 3.5 194.9 1.0
NE2 I:HIS50 3.7 194.9 1.0
NE2 E:HIS50 3.9 194.9 1.0
C19 J:1KI101 4.2 105.5 1.0
C25 J:1KI101 4.2 105.5 1.0
CG I:HIS50 4.4 194.9 1.0
ND1 E:HIS50 4.5 194.9 1.0
CD2 I:HIS50 4.6 194.9 1.0
C26 J:1KI101 4.7 105.5 1.0
BR2 E:1KI101 4.7 105.5 1.0
C21 E:1KI101 4.8 105.5 1.0
C20 E:1KI101 4.8 105.5 1.0
O I:GLY51 5.0 179.5 1.0

Reference:

K.Liu, Y.Tao, Q.Zhao, W.Xia, X.Li, S.Zhang, Y.Yao, H.Xiang, C.Han, L.Tan, B.Sun, D.Li, A.Li, C.Liu. Binding Adaptability of Chemical Ligands to Polymorphic Alpha-Synuclein Amyloid Fibrils. Proc.Natl.Acad.Sci.Usa V. 121 33121 2024.
ISSN: ESSN 1091-6490
PubMed: 39172784
DOI: 10.1073/PNAS.2321633121
Page generated: Sat Sep 28 08:40:24 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy