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Bromine in PDB 9c7b: Crystal Structure of R150H Neurodevelopmental Disease-Associated U2AF2 Variant

Protein crystallography data

The structure of Crystal Structure of R150H Neurodevelopmental Disease-Associated U2AF2 Variant, PDB code: 9c7b was solved by D.Maji, J.L.Jenkins, C.L.Kielkopf, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.98 / 1.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.722, 55.793, 76.675, 90, 90, 90
R / Rfree (%) 13.4 / 16.7

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of R150H Neurodevelopmental Disease-Associated U2AF2 Variant (pdb code 9c7b). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of R150H Neurodevelopmental Disease-Associated U2AF2 Variant, PDB code: 9c7b:

Bromine binding site 1 out of 1 in 9c7b

Go back to Bromine Binding Sites List in 9c7b
Bromine binding site 1 out of 1 in the Crystal Structure of R150H Neurodevelopmental Disease-Associated U2AF2 Variant


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of R150H Neurodevelopmental Disease-Associated U2AF2 Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br7

b:16.8
occ:1.00
BR B:BRU7 0.0 16.8 1.0
C5 B:BRU7 1.9 12.8 1.0
C4 B:BRU7 2.9 13.2 1.0
C6 B:BRU7 2.9 13.4 1.0
OP2 B:U6 3.0 14.0 1.0
O4 B:BRU7 3.1 13.5 1.0
O5' B:U6 3.4 13.4 1.0
H3' B:U6 3.5 17.5 1.0
HE1 A:HIS230 3.7 16.9 1.0
P B:U6 3.7 13.7 1.0
O B:HOH113 3.7 14.9 1.0
HG3 A:ARG227 3.8 13.7 1.0
CZ A:TYR152 4.0 12.8 1.0
O B:HOH112 4.0 16.9 1.0
CE1 A:TYR152 4.0 12.3 1.0
H2' B:U6 4.1 19.7 1.0
HE2 A:HIS230 4.1 17.2 1.0
N3 B:BRU7 4.1 12.4 1.0
N1 B:BRU7 4.1 13.0 1.0
HE1 A:TYR152 4.1 14.8 1.0
OH A:TYR152 4.2 15.7 1.0
O B:HOH110 4.2 15.5 1.0
CE1 A:HIS230 4.3 14.1 1.0
C3' B:U6 4.3 14.6 1.0
CE2 A:TYR152 4.4 12.6 1.0
NE2 A:HIS230 4.4 14.3 1.0
H5'' B:U6 4.4 17.6 1.0
C5' B:U6 4.5 14.7 1.0
OP1 B:U6 4.5 15.9 1.0
CD1 A:TYR152 4.5 12.5 1.0
C2' B:U6 4.6 16.4 1.0
C2 B:BRU7 4.6 13.0 1.0
HH A:TYR152 4.7 18.8 1.0
O A:HOH463 4.7 18.6 1.0
HE2 A:TYR152 4.7 15.1 1.0
HB2 A:ARG227 4.8 12.8 1.0
CG A:ARG227 4.8 11.4 1.0
CD2 A:TYR152 4.8 12.9 1.0
HD1 A:TYR152 4.9 15.0 1.0
CG A:TYR152 4.9 12.0 1.0
O5' B:BRU7 4.9 15.9 1.0

Reference:

D.Maji, J.L.Jenkins, P.L.Boutz, C.L.Kielkopf. Recurrent Neurodevelopmentally-Associated Variants of the Pre-Mrna Splicing Factor U2AF2 Alter Rna Binding Affinities and Interactions To Be Published.
Page generated: Thu Oct 31 16:52:12 2024

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