Bromine in PDB 9g4q: Crystal Structure of the Salivarius-1 Rna Motif

The structure of Crystal Structure of the Salivarius-1 Rna Motif, PDB code: 9g4q was solved by L.Huang, D.M.J.Lilley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.24 / 1.99
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	49.409, 68.094, 99.339, 90, 90, 90
R / Rfree (%)	22.5 / 25.5

The structure of Crystal Structure of the Salivarius-1 Rna Motif also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Potassium	(K)	4 atoms

The binding sites of Bromine atom in the Crystal Structure of the Salivarius-1 Rna Motif (pdb code 9g4q). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of the Salivarius-1 Rna Motif, PDB code: 9g4q:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Crystal Structure of the Salivarius-1 Rna Motif


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the Salivarius-1 Rna Motif within 5.0Å range: probe atom residue distance (Å) B Occ A:Br2 b:59.8 occ:1.00 BR A:CBV2 0.0 59.8 1.0 C5 A:CBV2 1.9 58.0 1.0 C6 A:CBV2 2.9 56.0 1.0 C4 A:CBV2 2.9 61.5 1.0 N4 A:CBV2 3.2 70.1 1.0 O A:HOH309 3.4 45.5 1.0 C5 A:C1 3.5 61.4 1.0 C6 A:C1 3.5 63.7 1.0 O1P A:CBV2 3.7 68.7 1.0 C4 A:C1 3.8 65.2 1.0 N1 A:C1 3.9 64.4 1.0 N1 A:CBV2 4.1 64.1 1.0 C3' A:C1 4.1 65.0 1.0 N3 A:C1 4.2 68.3 1.0 N3 A:CBV2 4.2 59.0 1.0 C2 A:C1 4.2 67.4 1.0 C2' A:C1 4.3 60.3 1.0 O5' A:CBV2 4.4 56.9 1.0 N4 A:C1 4.5 66.4 1.0 O4 A:U3 4.5 56.0 1.0 O5' A:C1 4.5 70.3 1.0 P A:CBV2 4.6 64.6 1.0 C2 A:CBV2 4.6 66.3 1.0 C1' A:C1 4.6 60.3 1.0 C5 A:U3 4.8 50.4 1.0 O3' A:C1 4.9 66.6 1.0 O2 A:C1 5.0 67.5 1.0 C4 A:U3 5.0 54.6 1.0

Bromine binding site 2 out of 2 in the Crystal Structure of the Salivarius-1 Rna Motif


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of the Salivarius-1 Rna Motif within 5.0Å range: probe atom residue distance (Å) B Occ B:Br2 b:66.0 occ:1.00 BR B:CBV2 0.0 66.0 1.0 C5 B:CBV2 1.9 58.8 1.0 C6 B:CBV2 2.9 53.0 1.0 C4 B:CBV2 2.9 59.7 1.0 N4 B:CBV2 3.2 47.6 1.0 C5 B:C1 3.5 61.4 1.0 C6 B:C1 3.6 64.3 1.0 C4 B:C1 3.7 63.0 1.0 O2P B:CBV2 3.8 83.0 1.0 N1 B:C1 3.9 65.8 1.0 N3 B:C1 4.0 69.1 1.0 N1 B:CBV2 4.1 57.8 1.0 C2 B:C1 4.1 70.7 1.0 N3 B:CBV2 4.2 54.4 1.0 N4 B:C1 4.3 58.0 1.0 C3' B:C1 4.3 77.9 1.0 C2' B:C1 4.4 75.1 1.0 O5' B:CBV2 4.4 80.9 1.0 O4 B:U3 4.5 61.4 1.0 C2 B:CBV2 4.6 60.0 1.0 P B:CBV2 4.7 85.0 1.0 O5' B:C1 4.8 80.8 1.0 C1' B:C1 4.8 73.9 1.0 C5 B:U3 4.8 61.7 1.0 O2 B:C1 4.9 75.1 1.0 C4 B:U3 5.0 58.2 1.0

L.Huang, D.M.J.Lilley. Structural Basis For Trna-Mimicking By Salivarius-1 Rna Motif To Be Published.