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Bromine in PDB 154d: Dna Distortion in Bis-Intercalated Complexes

Protein crystallography data

The structure of Dna Distortion in Bis-Intercalated Complexes, PDB code: 154d was solved by M.E.Peek, L.A.Lipscomb, J.A.Bertrand, Q.Gao, B.P.Roques, C.Garbay-Jaureguiberry, L.D.Williams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 7.10 / 2.50
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 27.090, 27.090, 81.890, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Bromine Binding Sites:

The binding sites of Bromine atom in the Dna Distortion in Bis-Intercalated Complexes (pdb code 154d). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Dna Distortion in Bis-Intercalated Complexes, PDB code: 154d:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 154d

Go back to Bromine Binding Sites List in 154d
Bromine binding site 1 out of 2 in the Dna Distortion in Bis-Intercalated Complexes


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Dna Distortion in Bis-Intercalated Complexes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1

b:25.0
occ:1.00
BR A:CBR1 0.0 25.0 1.0
C5 A:CBR1 1.8 20.9 1.0
C6 A:CBR1 2.8 20.4 1.0
C4 A:CBR1 2.8 20.7 1.0
N4 A:CBR1 3.1 20.4 1.0
O5' A:CBR1 3.4 21.6 1.0
C19 B:FLD9 3.6 7.8 1.0
N2 B:FLD9 3.7 6.0 1.0
O A:HOH32 3.9 55.5 1.0
C3 B:FLD9 4.0 5.2 1.0
N1 A:CBR1 4.1 20.5 1.0
N3 A:CBR1 4.1 20.3 1.0
C1 B:FLD9 4.2 5.2 1.0
C2 A:CBR1 4.6 20.0 1.0
C4 B:FLD9 4.7 4.7 1.0
C5' A:CBR1 4.9 21.6 1.0
C17 B:FLD9 4.9 4.7 1.0
O4' A:CBR1 5.0 21.6 1.0

Bromine binding site 2 out of 2 in 154d

Go back to Bromine Binding Sites List in 154d
Bromine binding site 2 out of 2 in the Dna Distortion in Bis-Intercalated Complexes


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Dna Distortion in Bis-Intercalated Complexes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br5

b:19.8
occ:1.00
BR B:CBR5 0.0 19.8 1.0
C5 B:CBR5 1.8 15.3 1.0
C6 B:CBR5 2.7 15.0 1.0
C4 B:CBR5 2.8 14.8 1.0
N4 B:CBR5 3.1 15.4 1.0
CJX B:FLD9 3.4 9.2 1.0
N2X B:FLD9 3.7 7.3 1.0
C3X B:FLD9 4.0 6.3 1.0
N3 B:CBR5 4.1 14.6 1.0
N1 B:CBR5 4.1 15.0 1.0
C1X B:FLD9 4.3 6.2 1.0
O5' B:CBR5 4.5 17.2 1.0
C2 B:CBR5 4.6 14.6 1.0
CKX B:FLD9 4.7 11.3 1.0
C4X B:FLD9 4.8 6.0 1.0
O4' B:CBR5 4.9 15.6 1.0
O B:HOH11 5.0 24.4 1.0

Reference:

M.E.Peek, L.A.Lipscomb, J.A.Bertrand, Q.Gao, B.P.Roques, C.Garbay-Jaureguiberry, L.D.Williams. Dna Distortion in Bis-Intercalated Complexes. Biochemistry V. 33 3794 1994.
ISSN: ISSN 0006-2960
PubMed: 8142381
DOI: 10.1021/BI00179A002
Page generated: Sat Dec 12 01:59:29 2020

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