Atomistry » Bromine » PDB 101d-1e5a » 1awc
Atomistry »
  Bromine »
    PDB 101d-1e5a »
      1awc »

Bromine in PDB 1awc: Mouse Gabp Alpha/Beta Domain Bound to Dna

Protein crystallography data

The structure of Mouse Gabp Alpha/Beta Domain Bound to Dna, PDB code: 1awc was solved by A.H.Batchelor, C.Wolberger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 2.15
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 201.600, 34.550, 59.260, 90.00, 99.83, 90.00
R / Rfree (%) 21.1 / 28.2

Bromine Binding Sites:

The binding sites of Bromine atom in the Mouse Gabp Alpha/Beta Domain Bound to Dna (pdb code 1awc). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 5 binding sites of Bromine where determined in the Mouse Gabp Alpha/Beta Domain Bound to Dna, PDB code: 1awc:
Jump to Bromine binding site number: 1; 2; 3; 4; 5;

Bromine binding site 1 out of 5 in 1awc

Go back to Bromine Binding Sites List in 1awc
Bromine binding site 1 out of 5 in the Mouse Gabp Alpha/Beta Domain Bound to Dna


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Mouse Gabp Alpha/Beta Domain Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Br3

b:78.2
occ:1.00
BR D:BRU3 0.0 78.2 1.0
C5 D:BRU3 1.9 53.8 1.0
C6 D:BRU3 2.8 54.7 1.0
C4 D:BRU3 2.8 51.7 1.0
O4 D:BRU3 3.1 45.8 1.0
C8 D:DA2 3.4 44.3 1.0
N9 D:DA2 3.7 46.6 1.0
C2' D:DA2 3.7 59.9 1.0
N7 D:DA2 3.9 38.1 1.0
N3 D:BRU3 4.1 49.0 1.0
N1 D:BRU3 4.1 54.1 1.0
C1' D:DA2 4.2 56.4 1.0
C4 D:DA2 4.2 40.9 1.0
C5 D:DA2 4.3 35.6 1.0
C2 D:BRU3 4.6 53.9 1.0
O6 D:DG4 4.7 40.0 1.0

Bromine binding site 2 out of 5 in 1awc

Go back to Bromine Binding Sites List in 1awc
Bromine binding site 2 out of 5 in the Mouse Gabp Alpha/Beta Domain Bound to Dna


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Mouse Gabp Alpha/Beta Domain Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Br15

b:75.2
occ:1.00
BR D:CBR15 0.0 75.2 1.0
C5 D:CBR15 1.9 60.9 1.0
C4 D:CBR15 2.8 58.1 1.0
C6 D:CBR15 2.8 62.7 1.0
N4 D:CBR15 3.0 55.4 1.0
C2' D:DA14 3.9 62.1 1.0
C8 D:DA14 4.0 51.0 1.0
N3 D:CBR15 4.1 52.6 1.0
N1 D:CBR15 4.1 61.1 1.0
N9 D:DA14 4.2 51.0 1.0
N7 D:DA14 4.3 48.4 1.0
C1' D:DA14 4.5 57.3 1.0
C4 D:DA14 4.6 47.4 1.0
C2 D:CBR15 4.6 55.7 1.0
C5 D:DA14 4.7 47.0 1.0

Bromine binding site 3 out of 5 in 1awc

Go back to Bromine Binding Sites List in 1awc
Bromine binding site 3 out of 5 in the Mouse Gabp Alpha/Beta Domain Bound to Dna


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Mouse Gabp Alpha/Beta Domain Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Br18

b:93.2
occ:1.00
BR D:CBR18 0.0 93.2 1.0
C5 D:CBR18 1.9 73.5 1.0
C6 D:CBR18 2.8 75.1 1.0
C4 D:CBR18 2.8 72.3 1.0
N4 D:CBR18 3.0 69.6 1.0
C2' D:DC17 3.4 72.1 1.0
C6 D:DC17 3.8 47.4 1.0
N1 D:DC17 3.9 55.0 1.0
N1 D:CBR18 4.1 74.7 1.0
N3 D:CBR18 4.1 68.7 1.0
C1' D:DC17 4.1 64.9 1.0
C5 D:DC17 4.2 42.7 1.0
OP2 D:CBR18 4.4 91.8 1.0
C2 D:DC17 4.5 46.9 1.0
C2 D:CBR18 4.6 69.6 1.0
C4 D:DC17 4.7 36.3 1.0
C3' D:DC17 4.8 78.8 1.0
N3 D:DC17 4.8 40.2 1.0
O5' D:CBR18 4.9 90.4 1.0
O6 D:DG19 4.9 46.0 1.0

Bromine binding site 4 out of 5 in 1awc

Go back to Bromine Binding Sites List in 1awc
Bromine binding site 4 out of 5 in the Mouse Gabp Alpha/Beta Domain Bound to Dna


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Mouse Gabp Alpha/Beta Domain Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Br28

b:77.5
occ:1.00
BR E:BRU28 0.0 77.5 1.0
C5 E:BRU28 1.9 56.2 1.0
C6 E:BRU28 2.8 56.9 1.0
C4 E:BRU28 2.8 53.9 1.0
O4 E:BRU28 3.1 46.0 1.0
C8 E:DG27 3.7 57.1 1.0
N7 E:DG27 3.8 48.9 1.0
N9 E:DG27 3.8 60.5 1.0
C5 E:DG27 3.9 46.7 1.0
C4 E:DG27 3.9 52.6 1.0
C2' E:DG27 4.1 76.4 1.0
N3 E:BRU28 4.1 47.5 1.0
N1 E:BRU28 4.1 58.0 1.0
C1' E:DG27 4.4 70.0 1.0
C6 E:DG27 4.6 42.4 1.0
N3 E:DG27 4.6 48.9 1.0
C2 E:BRU28 4.7 54.1 1.0
O6 E:DG29 4.8 38.0 1.0
N7 E:DG29 4.8 37.3 1.0

Bromine binding site 5 out of 5 in 1awc

Go back to Bromine Binding Sites List in 1awc
Bromine binding site 5 out of 5 in the Mouse Gabp Alpha/Beta Domain Bound to Dna


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Mouse Gabp Alpha/Beta Domain Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Br30

b:52.5
occ:1.00
BR E:BRU30 0.0 52.5 1.0
C5 E:BRU30 1.9 37.2 1.0
C6 E:BRU30 2.8 31.8 1.0
C4 E:BRU30 2.8 36.7 1.0
O4 E:BRU30 3.1 33.6 1.0
C2' E:DG29 3.7 52.2 1.0
C8 E:DG29 3.7 44.6 1.0
N9 E:DG29 3.9 42.7 1.0
N3 E:BRU30 4.1 33.1 1.0
N1 E:BRU30 4.1 31.0 1.0
N7 E:DG29 4.1 37.3 1.0
C1' E:DG29 4.3 48.8 1.0
C4 E:DG29 4.4 37.5 1.0
N6 E:DA31 4.4 36.3 1.0
C5 E:DG29 4.5 30.4 1.0
C2 E:BRU30 4.7 32.9 1.0
OP2 E:BRU30 4.8 63.6 1.0
N7 E:DA31 5.0 32.7 1.0

Reference:

A.H.Batchelor, D.E.Piper, F.C.De La Brousse, S.L.Mcknight, C.Wolberger. The Structure of Gabpalpha/Beta: An Ets Domain- Ankyrin Repeat Heterodimer Bound to Dna. Science V. 279 1037 1998.
ISSN: ISSN 0036-8075
PubMed: 9461436
DOI: 10.1126/SCIENCE.279.5353.1037
Page generated: Sat Dec 12 01:59:35 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy