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Bromine in PDB 1awc: Mouse Gabp Alpha/Beta Domain Bound to Dna

Protein crystallography data

The structure of Mouse Gabp Alpha/Beta Domain Bound to Dna, PDB code: 1awc was solved by A.H.Batchelor, C.Wolberger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 2.15
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 201.600, 34.550, 59.260, 90.00, 99.83, 90.00
R / Rfree (%) 21.1 / 28.2

Bromine Binding Sites:

The binding sites of Bromine atom in the Mouse Gabp Alpha/Beta Domain Bound to Dna (pdb code 1awc). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 5 binding sites of Bromine where determined in the Mouse Gabp Alpha/Beta Domain Bound to Dna, PDB code: 1awc:
Jump to Bromine binding site number: 1; 2; 3; 4; 5;

Bromine binding site 1 out of 5 in 1awc

Go back to Bromine Binding Sites List in 1awc
Bromine binding site 1 out of 5 in the Mouse Gabp Alpha/Beta Domain Bound to Dna


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Mouse Gabp Alpha/Beta Domain Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Br3

b:78.2
occ:1.00
BR D:BRU3 0.0 78.2 1.0
C5 D:BRU3 1.9 53.8 1.0
C6 D:BRU3 2.8 54.7 1.0
C4 D:BRU3 2.8 51.7 1.0
O4 D:BRU3 3.1 45.8 1.0
C8 D:DA2 3.4 44.3 1.0
N9 D:DA2 3.7 46.6 1.0
C2' D:DA2 3.7 59.9 1.0
N7 D:DA2 3.9 38.1 1.0
N3 D:BRU3 4.1 49.0 1.0
N1 D:BRU3 4.1 54.1 1.0
C1' D:DA2 4.2 56.4 1.0
C4 D:DA2 4.2 40.9 1.0
C5 D:DA2 4.3 35.6 1.0
C2 D:BRU3 4.6 53.9 1.0
O6 D:DG4 4.7 40.0 1.0

Bromine binding site 2 out of 5 in 1awc

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Bromine binding site 2 out of 5 in the Mouse Gabp Alpha/Beta Domain Bound to Dna


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Mouse Gabp Alpha/Beta Domain Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Br15

b:75.2
occ:1.00
BR D:CBR15 0.0 75.2 1.0
C5 D:CBR15 1.9 60.9 1.0
C4 D:CBR15 2.8 58.1 1.0
C6 D:CBR15 2.8 62.7 1.0
N4 D:CBR15 3.0 55.4 1.0
C2' D:DA14 3.9 62.1 1.0
C8 D:DA14 4.0 51.0 1.0
N3 D:CBR15 4.1 52.6 1.0
N1 D:CBR15 4.1 61.1 1.0
N9 D:DA14 4.2 51.0 1.0
N7 D:DA14 4.3 48.4 1.0
C1' D:DA14 4.5 57.3 1.0
C4 D:DA14 4.6 47.4 1.0
C2 D:CBR15 4.6 55.7 1.0
C5 D:DA14 4.7 47.0 1.0

Bromine binding site 3 out of 5 in 1awc

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Bromine binding site 3 out of 5 in the Mouse Gabp Alpha/Beta Domain Bound to Dna


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Mouse Gabp Alpha/Beta Domain Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Br18

b:93.2
occ:1.00
BR D:CBR18 0.0 93.2 1.0
C5 D:CBR18 1.9 73.5 1.0
C6 D:CBR18 2.8 75.1 1.0
C4 D:CBR18 2.8 72.3 1.0
N4 D:CBR18 3.0 69.6 1.0
C2' D:DC17 3.4 72.1 1.0
C6 D:DC17 3.8 47.4 1.0
N1 D:DC17 3.9 55.0 1.0
N1 D:CBR18 4.1 74.7 1.0
N3 D:CBR18 4.1 68.7 1.0
C1' D:DC17 4.1 64.9 1.0
C5 D:DC17 4.2 42.7 1.0
OP2 D:CBR18 4.4 91.8 1.0
C2 D:DC17 4.5 46.9 1.0
C2 D:CBR18 4.6 69.6 1.0
C4 D:DC17 4.7 36.3 1.0
C3' D:DC17 4.8 78.8 1.0
N3 D:DC17 4.8 40.2 1.0
O5' D:CBR18 4.9 90.4 1.0
O6 D:DG19 4.9 46.0 1.0

Bromine binding site 4 out of 5 in 1awc

Go back to Bromine Binding Sites List in 1awc
Bromine binding site 4 out of 5 in the Mouse Gabp Alpha/Beta Domain Bound to Dna


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Mouse Gabp Alpha/Beta Domain Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Br28

b:77.5
occ:1.00
BR E:BRU28 0.0 77.5 1.0
C5 E:BRU28 1.9 56.2 1.0
C6 E:BRU28 2.8 56.9 1.0
C4 E:BRU28 2.8 53.9 1.0
O4 E:BRU28 3.1 46.0 1.0
C8 E:DG27 3.7 57.1 1.0
N7 E:DG27 3.8 48.9 1.0
N9 E:DG27 3.8 60.5 1.0
C5 E:DG27 3.9 46.7 1.0
C4 E:DG27 3.9 52.6 1.0
C2' E:DG27 4.1 76.4 1.0
N3 E:BRU28 4.1 47.5 1.0
N1 E:BRU28 4.1 58.0 1.0
C1' E:DG27 4.4 70.0 1.0
C6 E:DG27 4.6 42.4 1.0
N3 E:DG27 4.6 48.9 1.0
C2 E:BRU28 4.7 54.1 1.0
O6 E:DG29 4.8 38.0 1.0
N7 E:DG29 4.8 37.3 1.0

Bromine binding site 5 out of 5 in 1awc

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Bromine binding site 5 out of 5 in the Mouse Gabp Alpha/Beta Domain Bound to Dna


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Mouse Gabp Alpha/Beta Domain Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Br30

b:52.5
occ:1.00
BR E:BRU30 0.0 52.5 1.0
C5 E:BRU30 1.9 37.2 1.0
C6 E:BRU30 2.8 31.8 1.0
C4 E:BRU30 2.8 36.7 1.0
O4 E:BRU30 3.1 33.6 1.0
C2' E:DG29 3.7 52.2 1.0
C8 E:DG29 3.7 44.6 1.0
N9 E:DG29 3.9 42.7 1.0
N3 E:BRU30 4.1 33.1 1.0
N1 E:BRU30 4.1 31.0 1.0
N7 E:DG29 4.1 37.3 1.0
C1' E:DG29 4.3 48.8 1.0
C4 E:DG29 4.4 37.5 1.0
N6 E:DA31 4.4 36.3 1.0
C5 E:DG29 4.5 30.4 1.0
C2 E:BRU30 4.7 32.9 1.0
OP2 E:BRU30 4.8 63.6 1.0
N7 E:DA31 5.0 32.7 1.0

Reference:

A.H.Batchelor, D.E.Piper, F.C.De La Brousse, S.L.Mcknight, C.Wolberger. The Structure of Gabpalpha/Beta: An Ets Domain- Ankyrin Repeat Heterodimer Bound to Dna. Science V. 279 1037 1998.
ISSN: ISSN 0036-8075
PubMed: 9461436
DOI: 10.1126/SCIENCE.279.5353.1037
Page generated: Sat Dec 12 01:59:35 2020

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