Atomistry » Bromine » PDB 101d-1e5a » 1dcr
Atomistry »
  Bromine »
    PDB 101d-1e5a »
      1dcr »

Bromine in PDB 1dcr: Crystal Structure of Dna Sheared Tandem G-A Base Pairs

Protein crystallography data

The structure of Crystal Structure of Dna Sheared Tandem G-A Base Pairs, PDB code: 1dcr was solved by Y.-G.Gao, H.Robinson, R.Sanishvili, A.Joachimiak, A.H.-J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.60
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 20.950, 61.860, 68.490, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 26.6

Other elements in 1dcr:

The structure of Crystal Structure of Dna Sheared Tandem G-A Base Pairs also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms
Sodium (Na) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of Dna Sheared Tandem G-A Base Pairs (pdb code 1dcr). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of Dna Sheared Tandem G-A Base Pairs, PDB code: 1dcr:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 1dcr

Go back to Bromine Binding Sites List in 1dcr
Bromine binding site 1 out of 2 in the Crystal Structure of Dna Sheared Tandem G-A Base Pairs


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Dna Sheared Tandem G-A Base Pairs within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br6

b:34.0
occ:1.00
BR A:BRU6 0.0 34.0 1.0
C5 A:BRU6 1.9 19.1 1.0
C6 A:BRU6 2.8 22.8 1.0
C4 A:BRU6 2.9 18.5 1.0
O4 A:BRU6 3.2 30.0 1.0
C8 A:DA5 3.5 24.6 1.0
O6 A:DG7 3.7 30.3 1.0
N1 A:DG7 3.7 30.6 1.0
N7 A:DA5 3.8 22.3 1.0
C6 A:DG7 3.8 31.4 1.0
O A:HOH1042 3.8 49.2 0.5
O A:HOH1013 3.9 43.2 1.0
N9 A:DA5 3.9 24.6 1.0
O A:HOH1069 4.0 40.1 0.5
C2' A:DA5 4.1 33.6 1.0
N1 A:BRU6 4.1 28.6 1.0
N3 A:BRU6 4.2 24.4 1.0
O A:HOH1075 4.3 36.2 0.5
C5 A:DA5 4.5 22.8 1.0
C1' A:DA5 4.5 25.2 1.0
C4 A:DA5 4.5 24.4 1.0
C2 A:DG7 4.6 20.8 1.0
C2 A:BRU6 4.7 35.4 1.0
C5 A:DG7 4.8 27.6 1.0
O B:HOH1056 4.8 32.8 0.5
N2 A:DG7 4.9 27.9 1.0

Bromine binding site 2 out of 2 in 1dcr

Go back to Bromine Binding Sites List in 1dcr
Bromine binding site 2 out of 2 in the Crystal Structure of Dna Sheared Tandem G-A Base Pairs


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of Dna Sheared Tandem G-A Base Pairs within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br16

b:34.1
occ:1.00
BR B:BRU16 0.0 34.1 1.0
C5 B:BRU16 1.9 32.3 1.0
C6 B:BRU16 2.8 17.3 1.0
C4 B:BRU16 2.9 27.6 1.0
O4 B:BRU16 3.0 30.8 1.0
C8 B:DA15 3.5 20.4 1.0
O6 B:DG17 3.6 35.9 1.0
N1 B:DG17 3.7 26.6 1.0
O B:HOH1009 3.7 34.5 1.0
N7 B:DA15 3.7 30.1 1.0
N9 B:DA15 3.7 21.9 1.0
C6 B:DG17 3.8 29.5 1.0
N1 B:BRU16 4.1 25.9 1.0
N3 B:BRU16 4.1 25.9 1.0
C2' B:DA15 4.1 28.2 1.0
C5 B:DA15 4.2 29.0 1.0
C4 B:DA15 4.2 24.8 1.0
C1' B:DA15 4.5 23.5 1.0
C2 B:DG17 4.5 29.7 1.0
NA B:NA25 4.6 55.9 1.0
C2 B:BRU16 4.7 27.1 1.0
C5 B:DG17 4.7 28.4 1.0
N2 B:DG17 4.9 29.3 1.0
O B:HOH1068 4.9 34.8 0.5
O B:HOH1032 5.0 47.7 1.0

Reference:

Y.G.Gao, H.Robinson, R.Sanishvili, A.Joachimiak, A.H.Wang. Structure and Recognition of Sheared Tandem G X A Base Pairs Associated with Human Centromere Dna Sequence at Atomic Resolution. Biochemistry V. 38 16452 1999.
ISSN: ISSN 0006-2960
PubMed: 10600106
DOI: 10.1021/BI9914614
Page generated: Wed Jul 10 16:24:14 2024

Last articles

Cl in 4NHT
Cl in 4NO7
Cl in 4NML
Cl in 4NN3
Cl in 4NMW
Cl in 4NM7
Cl in 4NM5
Cl in 4NM3
Cl in 4NM0
Cl in 4NHQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy