The binding sites of Bromine atom in the structure of Human Cyclin-Dependent Kinase 2 Complexed With the Inhibitor Hymenialdisine (pdb code 1dm2). This binding sites where shown with 5.0 Angstroms radius around Bromine atom.
The 1dm2 structure was solved by A.M.THUNNISSEN, S.-H.KIM, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
| Resolution (A) | 30.0-2.1 | | Space group | P212121 | | a (A) | 53.390 | | b (A) | 70.670 | | c (A) | 72.260 | | alpha (°) | 90.00 | | beta (°) | 90.00 | | gamma (°) | 90.00 | | Rfactor (%) | 19.2 | | Rfree (%) | 26.7 |
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Bromine binding site 1 out of 1 in 1dm2
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Click to enlarge | 
Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Bromine in the PDB 1dm2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Bromine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Ile10, A: Leu83, A: His84, A: Gln85, A: Asp86, A: Leu134, A: Hmd400, A: Hoh580, A: Hoh582, | conact list:
| Atom | Atom | Distance (A) | | Br | O A:Ile10 | 3.85 | | Br | CB A:Ile10 | 4.82 | | Br | CD1 A:Ile10 | 4.95 | | Br | C A:Ile10 | 5.00 | | Br | O A:Leu83 | 4.30 | | Br | O A:His84 | 3.82 | | Br | C A:His84 | 4.65 | | Br | C A:Gln85 | 4.71 | | Br | CA A:Gln85 | 4.93 | | Br | N A:Asp86 | 4.55 | | Br | CB A:Asp86 | 4.40 | | Br | OD2 A:Asp86 | 4.17 | | Br | CG A:Asp86 | 4.73 | | Br | CD2 A:Leu134 | 4.23 | | Br | C1 A:Hmd400 | 1.85 | | Br | BR1 A:Hmd400 | 0.00 | | Br | C2 A:Hmd400 | 2.91 | | Br | N1 A:Hmd400 | 2.77 | | Br | C4 A:Hmd400 | 3.95 | | Br | C3 A:Hmd400 | 4.05 | | Br | O A:Hoh580 | 4.24 | | Br | O A:Hoh582 | 3.67 |
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