Atomistry » Bromine » PDB 1e7b-1ih6 » 1eg6
Atomistry »
  Bromine »
    PDB 1e7b-1ih6 »
      1eg6 »

Bromine in PDB 1eg6: Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine

Protein crystallography data

The structure of Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine, PDB code: 1eg6 was solved by C.J.Cardin, W.A.Denny, J.R.Hobbs, J.H.Thorpe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.00
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 29.420, 53.440, 41.320, 90.00, 90.00, 90.00
R / Rfree (%) 22.8 / 34.7

Other elements in 1eg6:

The structure of Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine also contains other interesting chemical elements:

Cobalt (Co) 2 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine (pdb code 1eg6). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 4 binding sites of Bromine where determined in the Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine, PDB code: 1eg6:
Jump to Bromine binding site number: 1; 2; 3; 4;

Bromine binding site 1 out of 4 in 1eg6

Go back to Bromine Binding Sites List in 1eg6
Bromine binding site 1 out of 4 in the Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br41

b:48.4
occ:1.00
C5 A:DU3 2.0 24.5 1.0
C6 A:DU3 2.9 25.2 1.0
C4 A:DU3 3.0 26.9 1.0
O A:HOH49 3.1 33.1 1.0
O4 A:DU3 3.1 25.3 1.0
C2' A:DG2 3.4 45.4 1.0
C8 A:DG2 3.5 50.5 1.0
OP2 A:DU3 3.6 42.1 1.0
N9 A:DG2 3.7 47.7 1.0
N7 A:DG2 3.8 48.8 1.0
CD8 B:BFA50 4.0 36.0 0.5
C4 A:DG2 4.2 32.5 1.0
C3' A:DG2 4.2 41.7 1.0
O A:HOH45 4.2 49.6 1.0
C5 A:DG2 4.2 31.4 1.0
N1 A:DU3 4.2 35.3 1.0
N3 A:DU3 4.2 24.3 1.0
C1' A:DG2 4.3 50.9 1.0
OP1 A:DG2 4.3 84.5 1.0
ND2 B:BFA50 4.7 16.7 0.5
O5' A:DU3 4.7 39.9 1.0
P A:DU3 4.7 42.8 1.0
C2 A:DU3 4.8 35.9 1.0
O A:HOH52 4.9 34.1 1.0
O3' A:DG2 4.9 38.1 1.0
N3 A:DG2 5.0 36.6 1.0

Bromine binding site 2 out of 4 in 1eg6

Go back to Bromine Binding Sites List in 1eg6
Bromine binding site 2 out of 4 in the Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br44

b:39.5
occ:1.00
C5 B:DU3 2.0 28.6 1.0
C6 B:DU3 2.9 29.6 1.0
C4 B:DU3 2.9 20.5 1.0
O4 B:DU3 3.2 29.6 1.0
O B:HOH54 3.6 34.7 1.0
C8 B:DG2 3.6 26.3 1.0
N9 B:DG2 3.9 25.0 1.0
N7 B:DG2 4.0 23.9 1.0
C2' B:DG2 4.0 25.2 1.0
N3 B:DU3 4.2 27.2 1.0
N1 B:DU3 4.2 32.1 1.0
O B:HOH51 4.3 54.8 1.0
C1' B:DG2 4.4 21.7 1.0
C4 B:DG2 4.5 26.0 1.0
C5 B:DG2 4.5 24.1 1.0
CO B:3CO43 4.6 45.2 1.0
O A:HOH47 4.7 86.8 1.0
OP1 B:DG2 4.7 46.0 0.5
C2 B:DU3 4.8 28.9 1.0

Bromine binding site 3 out of 4 in 1eg6

Go back to Bromine Binding Sites List in 1eg6
Bromine binding site 3 out of 4 in the Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br50

b:56.5
occ:0.50
BR B:BFA50 0.0 56.5 0.5
C2 B:BFA50 1.5 41.5 0.5
C5 B:BFA50 1.9 38.5 0.5
C1 B:BFA50 2.2 37.1 0.5
C3 B:BFA50 2.7 46.0 0.5
C6 B:BFA50 2.8 43.7 0.5
C14 B:BFA50 2.8 38.4 0.5
N10 B:BFA50 3.1 35.2 0.5
O B:HOH60 3.2 39.8 1.0
C11 B:BFA50 3.5 39.5 0.5
C4 B:BFA50 3.9 43.3 0.5
C13 B:BFA50 4.2 41.0 0.5
C7 B:BFA50 4.2 42.0 0.5
OD1 B:BFA50 4.2 40.4 0.5
C12 B:BFA50 4.2 39.4 0.5
C12 B:BFA50 4.4 32.8 0.5
N9 B:BFA50 4.5 39.5 0.5
N4 B:DC5 4.6 35.8 1.0
C8 B:BFA50 4.7 40.3 0.5

Bromine binding site 4 out of 4 in 1eg6

Go back to Bromine Binding Sites List in 1eg6
Bromine binding site 4 out of 4 in the Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br50

b:54.1
occ:0.50
BR B:BFA50 0.0 54.1 0.5
C5 B:BFA50 1.9 37.1 0.5
C14 B:BFA50 2.8 38.4 0.5
C6 B:BFA50 2.8 43.3 0.5
N10 B:BFA50 3.0 39.7 0.5
N3 A:DG2 3.6 36.6 1.0
C4 A:DG2 3.8 32.5 1.0
C2 A:DG2 3.9 31.8 1.0
C8 B:BFA50 3.9 40.3 0.5
OD1 B:BFA50 4.0 36.1 0.5
C7 B:BFA50 4.2 44.3 0.5
C13 B:BFA50 4.2 38.5 0.5
C5 A:DG2 4.2 31.4 1.0
N9 A:DG2 4.3 47.7 1.0
N1 A:DG2 4.3 30.5 1.0
C12 B:BFA50 4.3 39.4 0.5
N2 A:DG2 4.4 37.2 1.0
N2 B:DG6 4.4 32.5 1.0
C6 A:DG2 4.5 34.2 1.0
C7 B:BFA50 4.6 42.0 0.5
C8 B:BFA50 4.7 37.7 0.5
CD1 B:BFA50 4.8 41.3 0.5
C1' A:DG2 4.8 50.9 1.0
C8 A:DG2 4.9 50.5 1.0
N7 A:DG2 4.9 48.8 1.0
O4' A:DG2 4.9 59.5 1.0
N9 B:BFA50 4.9 38.4 0.5
C13 B:BFA50 4.9 41.0 0.5

Reference:

J.H.Thorpe, J.R.Hobbs, A.K.Todd, W.A.Denny, P.Charlton, C.J.Cardin. Guanine Specific Binding at A Dna Junction Formed By D[Cg(5-Bru)Acg](2) with A Topoisomerase Poison in the Presence of Co(2+) Ions. Biochemistry V. 39 15055 2000.
ISSN: ISSN 0006-2960
PubMed: 11106483
DOI: 10.1021/BI001749P
Page generated: Sat Dec 12 02:00:26 2020

Last articles

Zn in 7L0B
Zn in 7KZZ
Zn in 7KZL
Zn in 7L3O
Zn in 7L52
Zn in 7L6T
Zn in 7KZ7
Zn in 7L6R
Zn in 7KKM
Zn in 7KKQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy