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Bromine in PDB 1f08: Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus

Protein crystallography data

The structure of Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus, PDB code: 1f08 was solved by E.J.Enemark, G.Chen, D.E.Vaughn, A.Stenlund, L.Joshua-Tor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.170, 84.897, 124.276, 90.00, 90.00, 90.00
R / Rfree (%) 24.1 / 27.1

Bromine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Bromine atom in the Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus (pdb code 1f08). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 14 binding sites of Bromine where determined in the Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus, PDB code: 1f08:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Bromine binding site 1 out of 14 in 1f08

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Bromine binding site 1 out of 14 in the Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br501

b:18.1
occ:0.87
NE A:ARG180 3.4 19.4 1.0
NH2 A:ARG180 3.6 20.5 1.0
CZ A:ARG180 4.0 20.1 1.0
CE1 A:PHE182 4.0 21.7 1.0
CD A:ARG180 4.5 19.4 1.0
CZ A:PHE182 4.8 21.6 1.0
CD1 A:PHE182 4.9 20.3 1.0

Bromine binding site 2 out of 14 in 1f08

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Bromine binding site 2 out of 14 in the Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br502

b:24.3
occ:0.86
NZ A:LYS267 3.4 18.8 1.0
CE A:LYS267 3.8 18.5 1.0

Bromine binding site 3 out of 14 in 1f08

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Bromine binding site 3 out of 14 in the Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br503

b:24.8
occ:0.75
O A:HOH52 3.2 26.9 1.0
NH1 A:ARG180 3.3 18.8 1.0
O A:HOH40 3.5 23.7 1.0
ND2 A:ASN189 3.6 24.4 1.0
CG2 A:ILE268 3.9 18.5 1.0
NH2 A:ARG180 4.0 20.5 1.0
CB A:GLN191 4.1 20.3 1.0
CZ A:ARG180 4.1 20.1 1.0
CD A:GLN191 4.2 26.4 1.0
OD1 A:ASN189 4.2 25.9 1.0
CG A:PRO266 4.3 16.7 1.0
CG A:ASN189 4.4 24.9 1.0
OE1 A:GLN191 4.4 28.0 1.0
NE2 A:GLN191 4.5 29.6 1.0
CG A:GLN191 4.5 23.6 1.0
CD1 A:ILE268 4.6 21.4 1.0
CD A:PRO266 4.6 17.0 1.0

Bromine binding site 4 out of 14 in 1f08

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Bromine binding site 4 out of 14 in the Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br504

b:31.9
occ:0.67
NH2 A:ARG247 3.3 38.3 1.0
O A:SER157 3.5 45.8 0.6
N A:LEU263 3.5 22.5 1.0
CA A:ARG158 3.7 43.8 0.6
NE A:ARG247 3.8 36.9 1.0
O A:ARG158 3.8 44.8 0.6
CA A:MET262 3.9 24.2 1.0
O A:LEU261 4.0 26.2 1.0
CZ A:ARG247 4.0 38.3 1.0
CD A:ARG243 4.1 26.9 1.0
C A:MET262 4.1 23.5 1.0
CB A:LEU263 4.2 22.2 1.0
C A:LEU261 4.2 26.1 1.0
N A:MET262 4.2 24.1 1.0
C A:SER157 4.2 45.1 0.6
C A:ARG158 4.3 44.0 0.6
N A:ARG158 4.4 44.6 0.6
CA A:LEU263 4.4 22.0 1.0
NE A:ARG243 4.5 27.8 1.0
CD1 A:LEU263 4.6 21.5 1.0
CB A:ARG158 4.6 43.0 0.6
CG A:ARG243 4.7 25.1 1.0
O A:LEU263 4.7 21.7 1.0
CG A:LEU263 4.7 21.1 1.0
CB A:LEU261 4.8 25.3 1.0

Bromine binding site 5 out of 14 in 1f08

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Bromine binding site 5 out of 14 in the Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br505

b:34.7
occ:0.69
OG A:SER174 3.1 30.3 1.0
O A:HOH39 3.4 25.7 1.0
CB A:SER174 3.8 29.6 1.0
ND1 A:HIS176 4.2 32.5 1.0
CB A:LEU164 4.3 30.0 1.0
CD A:LYS168 4.4 42.9 1.0
CA A:SER174 4.5 29.9 1.0
CE1 A:HIS176 4.6 32.5 1.0
CD1 A:LEU164 4.8 31.7 1.0
O A:LEU164 4.8 29.5 1.0
CD2 A:LEU164 4.8 30.1 1.0
CE A:LYS168 4.9 44.9 1.0
CG A:LEU164 4.9 30.7 1.0

Bromine binding site 6 out of 14 in 1f08

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Bromine binding site 6 out of 14 in the Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br506

b:17.0
occ:0.84
O A:HOH63 3.2 28.4 1.0
N A:ILE268 3.4 19.0 1.0
N A:ARG269 3.7 17.8 1.0
CD A:ARG180 3.9 19.4 1.0
CA A:LYS267 3.9 18.1 1.0
CG A:LYS267 4.0 17.5 1.0
C A:LYS267 4.0 19.6 1.0
CG1 A:ILE268 4.2 19.6 1.0
O A:ARG269 4.2 18.9 1.0
NZ A:LYS267 4.3 18.8 1.0
CB A:ARG269 4.3 19.8 1.0
CA A:ILE268 4.4 17.8 1.0
CB A:LYS267 4.4 18.3 1.0
C A:ILE268 4.5 18.5 1.0
CB A:ARG180 4.5 20.1 1.0
CA A:ARG269 4.5 18.4 1.0
O A:PRO266 4.8 18.9 1.0
CG A:ARG180 4.8 20.2 1.0
C A:ARG269 4.9 18.5 1.0
NE A:ARG180 4.9 19.4 1.0
CB A:ILE268 4.9 17.9 1.0
CD A:LYS267 4.9 18.1 1.0

Bromine binding site 7 out of 14 in 1f08

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Bromine binding site 7 out of 14 in the Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br507

b:25.7
occ:0.87
OG1 A:THR187 3.3 24.2 1.0
N A:ASN184 3.6 31.3 1.0
N A:LYS183 3.6 29.7 1.0
CB A:ASN184 3.7 33.6 1.0
CA A:PHE182 3.8 25.0 1.0
C A:PHE182 4.0 27.3 1.0
CB A:THR187 4.1 23.6 1.0
CB A:PHE182 4.1 24.1 1.0
CG A:LYS183 4.2 38.7 1.0
CD1 A:PHE182 4.2 20.3 1.0
CA A:ASN184 4.2 31.0 1.0
CG A:PHE182 4.3 22.0 1.0
CG2 A:THR187 4.4 23.3 1.0
O A:ASN184 4.4 29.3 1.0
CA A:LYS183 4.5 31.6 1.0
C A:LYS183 4.6 31.5 1.0
C A:ASN184 4.9 30.4 1.0
O A:PHE182 5.0 26.7 1.0

Bromine binding site 8 out of 14 in 1f08

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Bromine binding site 8 out of 14 in the Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus within 5.0Å range:

Bromine binding site 9 out of 14 in 1f08

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Bromine binding site 9 out of 14 in the Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br510

b:25.9
occ:0.73
O A:HOH56 3.3 32.7 1.0
CB A:LEU275 4.0 19.5 1.0
CD1 A:LEU275 4.1 19.3 1.0
CG A:LEU275 4.5 19.7 1.0
O A:HOH58 4.6 26.6 1.0
CD A:LYS279 4.7 24.9 1.0
CD2 A:LEU275 4.8 20.4 1.0
O A:LEU275 4.8 21.3 1.0

Bromine binding site 10 out of 14 in 1f08

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Bromine binding site 10 out of 14 in the Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 10 of Crystal Structure of the Dna-Binding Domain of the Replication Initiation Protein E1 From Papillomavirus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br511

b:25.7
occ:0.58
N A:LEU181 3.4 23.1 1.0
CB A:LEU181 4.0 26.4 1.0
CG A:LEU181 4.2 30.0 1.0
CB A:ARG180 4.2 20.1 1.0
CA A:LEU181 4.3 24.8 1.0
CA A:ARG180 4.3 20.6 1.0
C A:ARG180 4.3 22.5 1.0
O A:LEU181 4.6 24.1 1.0
CD1 A:LEU181 4.7 31.3 1.0
O A:HOH63 5.0 28.4 1.0
C A:LEU181 5.0 24.1 1.0

Reference:

E.J.Enemark, G.Chen, D.E.Vaughn, A.Stenlund, L.Joshua-Tor. Crystal Structure of the Dna Binding Domain of the Replication Initiation Protein E1 From Papillomavirus. Mol.Cell V. 6 149 2000.
ISSN: ISSN 1097-2765
PubMed: 10949036
DOI: 10.1016/S1097-2765(00)00016-2
Page generated: Sat Dec 12 02:00:33 2020

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