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Bromine in PDB 1hd2: Human Peroxiredoxin 5

Protein crystallography data

The structure of Human Peroxiredoxin 5, PDB code: 1hd2 was solved by J.P.Declercq, C.Evrard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 16.00 / 1.50
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 66.607, 66.607, 123.327, 90.00, 90.00, 90.00
R / Rfree (%) 13.3 / 16.5

Bromine Binding Sites:

The binding sites of Bromine atom in the Human Peroxiredoxin 5 (pdb code 1hd2). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 5 binding sites of Bromine where determined in the Human Peroxiredoxin 5, PDB code: 1hd2:
Jump to Bromine binding site number: 1; 2; 3; 4; 5;

Bromine binding site 1 out of 5 in 1hd2

Go back to Bromine Binding Sites List in 1hd2
Bromine binding site 1 out of 5 in the Human Peroxiredoxin 5


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Human Peroxiredoxin 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br301

b:18.8
occ:1.00
OG A:SER118 3.2 12.7 1.0
CB A:SER118 3.7 12.5 1.0

Bromine binding site 2 out of 5 in 1hd2

Go back to Bromine Binding Sites List in 1hd2
Bromine binding site 2 out of 5 in the Human Peroxiredoxin 5


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Human Peroxiredoxin 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br302

b:20.3
occ:1.00
O A:HOH2050 3.1 33.7 1.0
O A:HOH2101 3.2 20.8 1.0
O A:HOH2086 3.3 34.3 1.0
O A:HOH2088 3.3 12.4 1.0
CD A:PRO155 3.7 17.3 1.0
CA A:GLY54 3.8 12.3 1.0
O A:THR50 4.0 11.9 1.0
CB A:LEU153 4.1 12.9 1.0
CD1 A:LEU153 4.2 14.4 1.0
CG A:PRO155 4.2 23.0 1.0
CG2 A:THR50 4.3 15.6 1.0
N A:ALA154 4.5 11.4 1.0
CG A:LEU153 4.6 12.9 1.0
N A:GLY54 4.6 12.3 1.0
CD2 A:LEU153 4.8 15.6 1.0
C A:GLY54 4.8 10.6 1.0
C A:THR50 4.8 10.7 1.0
CB A:ALA154 4.9 13.8 1.0
CA A:LEU153 5.0 11.9 1.0

Bromine binding site 3 out of 5 in 1hd2

Go back to Bromine Binding Sites List in 1hd2
Bromine binding site 3 out of 5 in the Human Peroxiredoxin 5


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Human Peroxiredoxin 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br303

b:31.6
occ:1.00
N A:LEU149 3.4 13.2 1.0
CA A:GLY148 3.8 13.1 1.0
C A:GLY148 4.1 11.2 1.0
CA A:LEU149 4.3 12.4 1.0
CB A:LEU149 4.4 13.0 1.0
CG2 A:THR150 4.4 20.6 1.0
O A:LEU149 4.5 14.7 1.0
O A:HOH2207 4.5 23.7 1.0
C A:LEU149 4.6 13.2 1.0
CG A:LEU149 4.9 12.4 1.0

Bromine binding site 4 out of 5 in 1hd2

Go back to Bromine Binding Sites List in 1hd2
Bromine binding site 4 out of 5 in the Human Peroxiredoxin 5


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Human Peroxiredoxin 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br304

b:33.9
occ:1.00
O A:HOH2129 3.1 43.4 1.0
O A:HOH2138 3.2 46.8 1.0
N A:GLU91 3.4 13.9 1.0
O A:HOH2139 3.4 9.1 1.0
CB A:GLU91 3.5 22.9 1.0
N A:ALA90 3.7 12.6 1.0
O A:HOH2067 3.7 59.3 1.0
CA A:LYS89 3.8 16.5 1.0
CA A:ARG86 3.8 12.5 1.0
C A:LYS89 3.9 15.7 1.0
CA A:GLU91 4.1 16.3 1.0
O A:GLY85 4.1 11.6 1.0
CG A:ARG86 4.2 20.2 1.0
O A:ARG86 4.2 16.0 1.0
N A:LYS89 4.3 13.8 1.0
C A:ALA90 4.4 11.6 1.0
CB A:ARG86 4.4 14.3 1.0
C A:ARG86 4.5 11.5 1.0
N A:ARG86 4.5 10.9 1.0
CA A:ALA90 4.5 11.8 1.0
O A:HOH2127 4.6 39.0 1.0
C A:GLY85 4.6 11.2 1.0
OE1 A:GLU91 4.6 56.9 1.0
O A:LYS89 4.7 14.1 1.0
CG A:GLU91 4.9 33.8 1.0
O A:HOH2140 4.9 23.7 1.0
CB A:LYS89 5.0 25.0 1.0

Bromine binding site 5 out of 5 in 1hd2

Go back to Bromine Binding Sites List in 1hd2
Bromine binding site 5 out of 5 in the Human Peroxiredoxin 5


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Human Peroxiredoxin 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br305

b:17.2
occ:1.00
O A:HOH2167 3.3 11.9 1.0
N A:ASP113 3.5 13.2 1.0
N A:SER115 3.6 13.0 1.0
CB A:SER115 3.7 16.9 1.0
OG A:SER115 3.8 32.7 1.0
C A:ASP113 3.8 11.0 1.0
CA A:ASP113 3.9 12.3 1.0
CB A:ASP113 3.9 15.7 1.0
O A:HOH2174 3.9 27.7 1.0
CB A:LEU112 3.9 10.4 1.0
O A:ASP113 4.0 13.1 1.0
CA A:SER115 4.1 12.8 1.0
N A:ASP114 4.2 13.2 1.0
CG A:LEU116 4.3 11.1 1.0
N A:LEU116 4.3 11.2 1.0
CD2 A:LEU112 4.3 14.2 1.0
C A:LEU112 4.4 11.8 1.0
CA A:LEU112 4.6 11.2 1.0
C A:ASP114 4.6 12.0 1.0
C A:SER115 4.6 12.3 1.0
CG A:LEU112 4.7 12.3 1.0
CD1 A:LEU116 4.7 14.5 1.0
OD2 A:ASP113 4.7 53.6 1.0
CG A:ASP113 4.8 24.7 1.0
CB A:LEU116 5.0 11.2 1.0
CA A:ASP114 5.0 14.6 1.0
O A:HOH2173 5.0 29.6 1.0

Reference:

J.P.Declercq, C.Evrard, A.Clippe, D.V.Stricht, A.Bernard, B.Knoops. Crystal Structure of Human Peroxiredoxin 5, A Novel Type of Mammalian Peroxiredoxin at 1.5 A Resolution. J.Mol.Biol. V. 311 751 2001.
ISSN: ISSN 0022-2836
PubMed: 11518528
DOI: 10.1006/JMBI.2001.4853
Page generated: Wed Jul 10 16:38:58 2024

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