Atomistry » Bromine » PDB 1iha-1m9r » 1j6s
Atomistry »
  Bromine »
    PDB 1iha-1m9r »
      1j6s »

Bromine in PDB 1j6s: Crystal Structure of An Rna Tetraplex (Ugaggu)4 with A- Tetrads, G-Tetrads, U-Tetrads and G-U Octads

Protein crystallography data

The structure of Crystal Structure of An Rna Tetraplex (Ugaggu)4 with A- Tetrads, G-Tetrads, U-Tetrads and G-U Octads, PDB code: 1j6s was solved by B.Pan, Y.Xiong, K.Shi, J.Deng, M.Sundaralingam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.40
Space group P 4 21 2
Cell size a, b, c (Å), α, β, γ (°) 37.984, 37.984, 82.195, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 18.4

Other elements in 1j6s:

The structure of Crystal Structure of An Rna Tetraplex (Ugaggu)4 with A- Tetrads, G-Tetrads, U-Tetrads and G-U Octads also contains other interesting chemical elements:

Barium (Ba) 8 atoms
Sodium (Na) 8 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of An Rna Tetraplex (Ugaggu)4 with A- Tetrads, G-Tetrads, U-Tetrads and G-U Octads (pdb code 1j6s). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 4 binding sites of Bromine where determined in the Crystal Structure of An Rna Tetraplex (Ugaggu)4 with A- Tetrads, G-Tetrads, U-Tetrads and G-U Octads, PDB code: 1j6s:
Jump to Bromine binding site number: 1; 2; 3; 4;

Bromine binding site 1 out of 4 in 1j6s

Go back to Bromine Binding Sites List in 1j6s
Bromine binding site 1 out of 4 in the Crystal Structure of An Rna Tetraplex (Ugaggu)4 with A- Tetrads, G-Tetrads, U-Tetrads and G-U Octads


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of An Rna Tetraplex (Ugaggu)4 with A- Tetrads, G-Tetrads, U-Tetrads and G-U Octads within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1

b:14.4
occ:1.00
BR A:BRU1 0.0 14.4 1.0
C5 A:BRU1 1.9 9.8 1.0
C6 A:BRU1 2.8 10.2 1.0
C4 A:BRU1 2.8 10.5 1.0
O4 A:BRU1 3.1 9.6 1.0
OP1 C:A15 3.4 8.1 1.0
O5' C:A15 3.6 7.0 1.0
C5' C:A15 3.7 7.1 1.0
O C:HOH377 3.8 22.3 1.0
C4' C:A15 3.9 6.7 1.0
N3 A:BRU1 4.1 9.3 1.0
O3' C:A15 4.1 6.8 1.0
N1 A:BRU1 4.1 9.6 1.0
P C:A15 4.2 8.1 1.0
O A:HOH388 4.6 26.1 1.0
O5' A:BRU1 4.6 9.7 1.0
C2 A:BRU1 4.7 9.6 1.0
C3' C:A15 4.7 7.1 1.0
OP1 C:G16 4.8 7.7 1.0
O A:HOH319 5.0 17.8 1.0
O A:HOH355 5.0 11.2 1.0
O3' C:G14 5.0 7.0 1.0

Bromine binding site 2 out of 4 in 1j6s

Go back to Bromine Binding Sites List in 1j6s
Bromine binding site 2 out of 4 in the Crystal Structure of An Rna Tetraplex (Ugaggu)4 with A- Tetrads, G-Tetrads, U-Tetrads and G-U Octads


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of An Rna Tetraplex (Ugaggu)4 with A- Tetrads, G-Tetrads, U-Tetrads and G-U Octads within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br7

b:8.4
occ:1.00
BR B:BRU7 0.0 8.4 1.0
C5 B:BRU7 1.9 6.4 1.0
C6 B:BRU7 2.8 6.4 1.0
C4 B:BRU7 2.9 6.9 1.0
O4 B:BRU7 3.2 6.2 1.0
O C:HOH333 3.5 18.2 1.0
O B:HOH353 4.1 19.4 1.0
N1 B:BRU7 4.1 6.7 1.0
N3 B:BRU7 4.1 6.3 1.0
O5' B:BRU7 4.1 9.0 1.0
C2 B:BRU7 4.7 6.4 1.0

Bromine binding site 3 out of 4 in 1j6s

Go back to Bromine Binding Sites List in 1j6s
Bromine binding site 3 out of 4 in the Crystal Structure of An Rna Tetraplex (Ugaggu)4 with A- Tetrads, G-Tetrads, U-Tetrads and G-U Octads


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of An Rna Tetraplex (Ugaggu)4 with A- Tetrads, G-Tetrads, U-Tetrads and G-U Octads within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Br13

b:12.4
occ:1.00
BR C:BRU13 0.0 12.4 1.0
C5 C:BRU13 1.9 9.3 1.0
C6 C:BRU13 2.8 9.4 1.0
C4 C:BRU13 2.9 9.3 1.0
O4 C:BRU13 3.1 9.6 1.0
O C:HOH390 4.1 24.5 1.0
N1 C:BRU13 4.1 9.1 1.0
N3 C:BRU13 4.1 9.3 1.0
O5' C:BRU13 4.4 14.5 1.0
C2 C:BRU13 4.7 9.4 1.0
O C:HOH370 4.8 27.4 1.0

Bromine binding site 4 out of 4 in 1j6s

Go back to Bromine Binding Sites List in 1j6s
Bromine binding site 4 out of 4 in the Crystal Structure of An Rna Tetraplex (Ugaggu)4 with A- Tetrads, G-Tetrads, U-Tetrads and G-U Octads


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of An Rna Tetraplex (Ugaggu)4 with A- Tetrads, G-Tetrads, U-Tetrads and G-U Octads within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Br19

b:7.6
occ:1.00
BR D:BRU19 0.0 7.6 1.0
C5 D:BRU19 1.9 5.7 1.0
C6 D:BRU19 2.8 5.8 1.0
C4 D:BRU19 2.8 5.9 1.0
O4 D:BRU19 3.1 5.8 1.0
N3 D:BRU19 4.1 6.0 1.0
N1 D:BRU19 4.1 5.7 1.0
O5' D:BRU19 4.2 7.8 1.0
C2 D:BRU19 4.7 6.3 1.0

Reference:

B.Pan, Y.Xiong, K.Shi, J.Deng, M.Sundaralingam. Crystal Structure of An Rna Purine-Rich Tetraplex Containing Adenine Tetrads: Implications For Specific Binding in Rna Tetraplexes Structure V. 11 815 2003.
ISSN: ISSN 0969-2126
PubMed: 12842044
DOI: 10.1016/S0969-2126(03)00107-2
Page generated: Sun Jan 24 08:27:11 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy