Bromine in PDB 1jid: Human SRP19 in Complex with Helix 6 of Human Srp Rna

The structure of Human SRP19 in Complex with Helix 6 of Human Srp Rna, PDB code: 1jid was solved by K.Wild, I.Sinning, S.Cusack, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.75 / 1.80
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	55.813, 109.782, 89.461, 90.00, 90.00, 90.00
R / Rfree (%)	18.6 / 22.2

The structure of Human SRP19 in Complex with Helix 6 of Human Srp Rna also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Bromine atom in the Human SRP19 in Complex with Helix 6 of Human Srp Rna (pdb code 1jid). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Human SRP19 in Complex with Helix 6 of Human Srp Rna, PDB code: 1jid:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Human SRP19 in Complex with Helix 6 of Human Srp Rna


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Human SRP19 in Complex with Helix 6 of Human Srp Rna within 5.0Å range: probe atom residue distance (Å) B Occ B:Br137 b:32.5 occ:0.35 BR B:5BU137 0.0 32.5 0.3 C5 B:5BU137 2.0 21.8 1.0 C6 B:5BU137 2.9 21.2 1.0 C4 B:5BU137 3.0 20.4 1.0 O4 B:5BU137 3.2 18.3 1.0 O B:HOH327 3.3 30.3 1.0 OP2 B:5BU137 3.5 23.1 1.0 C8 B:G136 3.5 22.0 1.0 N7 B:G136 3.7 19.7 1.0 O B:HOH350 3.7 31.8 1.0 O B:HOH325 3.7 24.5 1.0 OP2 B:G136 3.9 27.5 1.0 O5' B:G136 4.0 27.3 1.0 N9 B:G136 4.0 20.7 1.0 C3' B:G136 4.0 20.8 1.0 O B:HOH343 4.1 31.4 1.0 C5 B:G136 4.2 21.2 1.0 N3 B:5BU137 4.2 18.1 1.0 N1 B:5BU137 4.2 21.9 1.0 O B:HOH425 4.3 52.0 1.0 C4 B:G136 4.4 20.7 1.0 P B:5BU137 4.5 24.8 1.0 C2' B:G136 4.5 20.5 1.0 O5' B:5BU137 4.5 22.8 1.0 P B:G136 4.6 29.9 1.0 C1' B:G136 4.8 20.5 1.0 O3' B:G136 4.8 22.1 1.0 C2 B:5BU137 4.8 20.9 1.0 C4' B:G136 4.9 22.4 1.0 C5' B:G136 5.0 24.3 1.0

Bromine binding site 2 out of 2 in the Human SRP19 in Complex with Helix 6 of Human Srp Rna


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Human SRP19 in Complex with Helix 6 of Human Srp Rna within 5.0Å range: probe atom residue distance (Å) B Occ B:Br142 b:37.7 occ:0.35 BR B:5BU142 0.0 37.7 0.3 C5 B:5BU142 2.0 29.1 1.0 CD1 A:ILE29 2.6 28.8 1.0 C6 B:5BU142 2.9 28.8 1.0 C4 B:5BU142 2.9 28.0 1.0 O4 B:5BU142 3.1 25.9 1.0 CG1 A:ILE29 3.4 23.3 1.0 C5 B:C141 3.5 22.9 1.0 C6 B:C141 3.5 21.8 1.0 O B:HOH413 3.7 49.8 1.0 OP2 B:5BU142 3.7 24.1 1.0 O B:HOH348 3.8 37.9 1.0 C4 B:C141 3.9 24.0 1.0 O B:HOH381 3.9 42.2 1.0 N1 B:C141 4.0 21.9 1.0 N3 B:5BU142 4.1 27.6 1.0 N1 B:5BU142 4.2 26.9 1.0 C3' B:C141 4.2 23.2 1.0 N3 B:C141 4.2 22.6 1.0 C2 B:C141 4.3 22.9 1.0 O5' B:5BU142 4.4 24.0 1.0 CB A:ILE29 4.4 20.4 1.0 C2' B:C141 4.5 22.6 1.0 N4 B:C141 4.5 24.4 1.0 P B:5BU142 4.6 22.9 1.0 CG2 A:ILE29 4.7 19.6 1.0 C2 B:5BU142 4.7 26.9 1.0 C1' B:C141 4.8 21.4 1.0 O5' B:C141 4.8 21.3 1.0 O3' B:C141 4.9 23.1 1.0

K.Wild, I.Sinning, S.Cusack. Crystal Structure of An Early Protein-Rna Assembly Complex of the Signal Recognition Particle. Science V. 294 598 2001.
ISSN: ISSN 0036-8075
PubMed: 11641499
DOI: 10.1126/SCIENCE.1063839