Bromine in PDB 1jzv: Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna

The structure of Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna, PDB code: 1jzv was solved by Y.Xiong, C.Sudarsanakumar, J.Deng, B.Pan, M.Sundaralingam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.70
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	45.800, 45.800, 89.650, 90.00, 90.00, 90.00
R / Rfree (%)	20.3 / 23.3

The structure of Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Iodine	(I)	2 atoms

The binding sites of Bromine atom in the Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna (pdb code 1jzv). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna, PDB code: 1jzv:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:Br7 b:19.3 occ:1.00 BR A:5BU7 0.0 19.3 1.0 C5 A:5BU7 1.9 18.7 1.0 C6 A:5BU7 2.8 18.4 1.0 C4 A:5BU7 2.9 19.5 1.0 O4 A:5BU7 3.1 20.1 1.0 C5 A:C6 3.5 16.2 1.0 C4 A:C6 3.5 17.6 1.0 O A:HOH332 3.5 30.4 1.0 O A:HOH333 3.6 26.7 1.0 OP2 A:5BU7 3.7 19.8 1.0 C6 A:C6 3.7 17.2 1.0 N3 A:C6 3.7 15.4 1.0 N1 A:C6 3.9 17.0 1.0 C2 A:C6 3.9 18.3 1.0 N4 A:C6 4.0 19.1 1.0 O A:HOH336 4.0 31.6 1.0 N1 A:5BU7 4.1 17.6 1.0 N3 A:5BU7 4.1 22.0 1.0 C3' A:C6 4.3 16.9 1.0 O5' A:5BU7 4.3 17.6 1.0 C2' A:C6 4.4 14.3 1.0 P A:5BU7 4.6 19.2 1.0 C2 A:5BU7 4.7 18.0 1.0 O2 A:C6 4.7 17.4 1.0 C1' A:C6 4.8 16.7 1.0 N7 A:G8 5.0 24.8 1.0

Bromine binding site 2 out of 2 in the Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna within 5.0Å range: probe atom residue distance (Å) B Occ C:Br27 b:27.7 occ:1.00 BR C:5BU27 0.0 27.7 1.0 C5 C:5BU27 1.9 24.1 1.0 C6 C:5BU27 2.8 21.1 1.0 C4 C:5BU27 2.9 22.5 1.0 O4 C:5BU27 3.1 23.3 1.0 C4 C:C26 3.5 20.6 1.0 C5 C:C26 3.6 23.0 1.0 N3 C:C26 3.7 20.2 1.0 O C:HOH309 3.7 31.7 1.0 C6 C:C26 3.7 22.0 1.0 O C:HOH324 3.8 29.3 1.0 OP2 C:5BU27 3.8 24.7 1.0 N1 C:C26 3.9 20.5 1.0 C2 C:C26 3.9 20.3 1.0 N4 C:C26 4.1 22.0 1.0 N1 C:5BU27 4.1 23.3 1.0 N3 C:5BU27 4.1 23.8 1.0 C3' C:C26 4.3 20.7 1.0 C2' C:C26 4.3 18.9 1.0 O5' C:5BU27 4.3 23.2 1.0 O2 C:C26 4.6 19.6 1.0 P C:5BU27 4.6 25.0 1.0 N7 C:G28 4.7 22.6 1.0 C2 C:5BU27 4.7 21.6 1.0 C1' C:C26 4.7 21.6 1.0 O3' C:C26 5.0 24.7 1.0

Y.Xiong, C.Sudarsanakumar, J.Deng, M.Pan, M.Sundaralingam. Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna To Be Published.