Bromine in PDB 1kh6: Crystal Structure of An Rna Tertiary Domain Essential to Hcv Ires- Mediated Translation Initiation.

The structure of Crystal Structure of An Rna Tertiary Domain Essential to Hcv Ires- Mediated Translation Initiation., PDB code: 1kh6 was solved by J.S.Kieft, K.Zhou, A.Grech, R.Jubin, J.A.Doudna, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.90
Space group	P 42 21 2
Cell size a, b, c (Å), α, β, γ (°)	66.532, 66.532, 95.850, 90.00, 90.00, 90.00
R / Rfree (%)	28.3 / 27.9

The binding sites of Bromine atom in the Crystal Structure of An Rna Tertiary Domain Essential to Hcv Ires- Mediated Translation Initiation. (pdb code 1kh6). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 6 binding sites of Bromine where determined in the Crystal Structure of An Rna Tertiary Domain Essential to Hcv Ires- Mediated Translation Initiation., PDB code: 1kh6:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6;

Bromine binding site 1 out of 6 in the Crystal Structure of An Rna Tertiary Domain Essential to Hcv Ires- Mediated Translation Initiation.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of An Rna Tertiary Domain Essential to Hcv Ires- Mediated Translation Initiation. within 5.0Å range: probe atom residue distance (Å) B Occ A:Br16 b:0.7 occ:1.00 BR A:5BU16 0.0 0.7 1.0 C5 A:5BU16 1.6 0.1 1.0 C6 A:5BU16 2.6 0.0 1.0 C4 A:5BU16 2.6 0.8 1.0 O4 A:5BU16 3.0 0.9 1.0 N1 A:5BU16 3.9 0.8 1.0 N3 A:5BU16 3.9 0.8 1.0 C2 A:5BU16 4.4 0.7 1.0 O4' A:5BU16 5.0 0.8 1.0

Bromine binding site 2 out of 6 in the Crystal Structure of An Rna Tertiary Domain Essential to Hcv Ires- Mediated Translation Initiation.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of An Rna Tertiary Domain Essential to Hcv Ires- Mediated Translation Initiation. within 5.0Å range: probe atom residue distance (Å) B Occ A:Br26 b:46.6 occ:1.00 BR A:5BU26 0.0 46.6 1.0 C5 A:5BU26 1.6 48.3 1.0 C6 A:5BU26 2.6 48.2 1.0 C4 A:5BU26 2.6 47.9 1.0 O4 A:5BU26 3.0 48.9 1.0 OP2 A:5BU26 3.1 63.9 1.0 C3' A:A25 3.6 61.7 1.0 C8 A:A25 3.6 55.0 1.0 N1 A:5BU26 3.8 48.5 1.0 N3 A:5BU26 3.9 47.0 1.0 N9 A:A25 3.9 55.7 1.0 N7 A:A25 3.9 53.5 1.0 O5' A:A25 3.9 67.5 1.0 C2' A:A25 4.0 60.4 1.0 O5' A:5BU26 4.0 60.9 1.0 P A:5BU26 4.1 63.6 1.0 N4 A:C27 4.2 48.3 1.0 O3' A:A25 4.3 63.2 1.0 C5 A:A25 4.4 53.0 1.0 C4 A:A25 4.4 53.9 1.0 OP2 A:A25 4.4 69.1 1.0 C2 A:5BU26 4.4 48.2 1.0 C1' A:A25 4.4 58.0 1.0 C4' A:A25 4.6 61.6 1.0 C5 A:C27 4.6 49.1 1.0 C4 A:C27 4.8 48.8 1.0 O4' A:A25 4.8 59.0 1.0 P A:A25 4.8 69.2 1.0 C5' A:A25 4.8 63.9 1.0 O4' A:5BU26 4.9 52.8 1.0

Bromine binding site 3 out of 6 in the Crystal Structure of An Rna Tertiary Domain Essential to Hcv Ires- Mediated Translation Initiation.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of An Rna Tertiary Domain Essential to Hcv Ires- Mediated Translation Initiation. within 5.0Å range: probe atom residue distance (Å) B Occ A:Br36 b:23.1 occ:1.00 BR A:5BU36 0.0 23.1 1.0 C5 A:5BU36 1.6 29.0 1.0 C6 A:5BU36 2.5 31.4 1.0 C4 A:5BU36 2.6 30.7 1.0 O4 A:5BU36 2.9 34.7 1.0 OP2 A:5BU36 3.4 47.8 1.0 C8 A:A35 3.6 43.4 1.0 N7 A:A35 3.7 42.6 1.0 N3 A:5BU36 3.8 32.0 1.0 N1 A:5BU36 3.8 34.8 1.0 N9 A:A35 3.9 43.9 1.0 C5 A:A35 4.0 42.5 1.0 C3' A:A35 4.1 48.9 1.0 C4 A:A35 4.1 43.0 1.0 C2' A:A35 4.3 47.9 1.0 BR A:5BU37 4.3 20.3 1.0 C2 A:5BU36 4.4 34.3 1.0 O5' A:5BU36 4.4 46.7 1.0 P A:5BU36 4.4 49.6 1.0 C1' A:A35 4.6 46.6 1.0 C6 A:A35 4.7 43.2 1.0 O5' A:A35 4.7 51.7 1.0 O3' A:A35 4.8 48.6 1.0 O4 A:5BU37 4.9 37.6 1.0 N3 A:A35 4.9 43.6 1.0

Bromine binding site 4 out of 6 in the Crystal Structure of An Rna Tertiary Domain Essential to Hcv Ires- Mediated Translation Initiation.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of An Rna Tertiary Domain Essential to Hcv Ires- Mediated Translation Initiation. within 5.0Å range: probe atom residue distance (Å) B Occ A:Br37 b:20.3 occ:1.00 BR A:5BU37 0.0 20.3 1.0 C5 A:5BU37 1.6 28.4 1.0 C6 A:5BU37 2.6 28.4 1.0 C4 A:5BU37 2.6 31.3 1.0 O4 A:5BU37 3.0 37.6 1.0 OP2 A:5BU37 3.4 38.5 1.0 C5 A:5BU36 3.7 29.0 1.0 C6 A:5BU36 3.8 31.4 1.0 N3 A:5BU37 3.8 31.3 1.0 N1 A:5BU37 3.8 30.6 1.0 C4 A:5BU36 3.9 30.7 1.0 N1 A:5BU36 4.0 34.8 1.0 N3 A:5BU36 4.1 32.0 1.0 C3' A:5BU36 4.2 41.2 1.0 C2 A:5BU36 4.2 34.3 1.0 BR A:5BU36 4.3 23.1 1.0 C2 A:5BU37 4.4 31.7 1.0 C2' A:5BU36 4.4 40.5 1.0 O4 A:5BU36 4.4 34.7 1.0 O5' A:5BU37 4.5 37.1 1.0 P A:5BU37 4.5 40.6 1.0 O5' A:5BU36 4.8 46.7 1.0 C1' A:5BU36 4.8 38.0 1.0 O3' A:5BU36 4.9 40.6 1.0 O2 A:5BU36 5.0 35.4 1.0

Bromine binding site 5 out of 6 in the Crystal Structure of An Rna Tertiary Domain Essential to Hcv Ires- Mediated Translation Initiation.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Crystal Structure of An Rna Tertiary Domain Essential to Hcv Ires- Mediated Translation Initiation. within 5.0Å range: probe atom residue distance (Å) B Occ A:Br38 b:32.9 occ:1.00 BR A:5BU38 0.0 32.9 1.0 C5 A:5BU38 1.6 38.3 1.0 C6 A:5BU38 2.6 38.8 1.0 C4 A:5BU38 2.6 40.3 1.0 O4 A:5BU38 3.0 44.0 1.0 O2 A:5BU37 3.5 32.2 1.0 C2 A:5BU37 3.7 31.7 1.0 C2' A:5BU37 3.8 32.5 1.0 N3 A:5BU38 3.9 40.2 1.0 N1 A:5BU38 3.9 39.8 1.0 OP2 A:5BU38 4.0 33.4 1.0 N3 A:5BU37 4.0 31.3 1.0 N1 A:5BU37 4.2 30.6 1.0 C2 A:5BU38 4.4 39.4 1.0 O2' A:5BU37 4.4 33.3 1.0 C1' A:5BU37 4.5 31.4 1.0 C3' A:5BU37 4.7 33.3 1.0 C4 A:5BU37 4.8 31.3 1.0 C6 A:5BU37 4.9 28.4 1.0 C2 A:A24 4.9 70.6 1.0 N1 A:A24 5.0 69.9 1.0

Bromine binding site 6 out of 6 in the Crystal Structure of An Rna Tertiary Domain Essential to Hcv Ires- Mediated Translation Initiation.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Crystal Structure of An Rna Tertiary Domain Essential to Hcv Ires- Mediated Translation Initiation. within 5.0Å range: probe atom residue distance (Å) B Occ A:Br44 b:34.9 occ:1.00 BR A:5BU44 0.0 34.9 1.0 C5 A:5BU44 1.6 39.7 1.0 C6 A:5BU44 2.6 40.1 1.0 C4 A:5BU44 2.7 40.8 1.0 O4 A:5BU44 3.0 43.4 1.0 N1 A:5BU44 3.9 40.5 1.0 N3 A:5BU44 3.9 41.1 1.0 O5' A:5BU44 4.3 28.1 1.0 C2 A:5BU44 4.4 41.1 1.0

J.S.Kieft, K.Zhou, A.Grech, R.Jubin, J.A.Doudna. Crystal Structure of An Rna Tertiary Domain Essential to Hcv Ires-Mediated Translation Initiation. Nat.Struct.Biol. V. 9 370 2002.
ISSN: ISSN 1072-8368
PubMed: 11927953
DOI: 10.1038/NSB781