Atomistry » Bromine » PDB 1iha-1m9r » 1l9m
Atomistry »
  Bromine »
    PDB 1iha-1m9r »
      1l9m »

Bromine in PDB 1l9m: Three-Dimensional Structure of the Human Transglutaminase 3 Enzyme: Binding of Calcium Ions Change Structure For Activation

Enzymatic activity of Three-Dimensional Structure of the Human Transglutaminase 3 Enzyme: Binding of Calcium Ions Change Structure For Activation

All present enzymatic activity of Three-Dimensional Structure of the Human Transglutaminase 3 Enzyme: Binding of Calcium Ions Change Structure For Activation:
2.3.2.13;

Protein crystallography data

The structure of Three-Dimensional Structure of the Human Transglutaminase 3 Enzyme: Binding of Calcium Ions Change Structure For Activation, PDB code: 1l9m was solved by B.Ahvazi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.10
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 57.709, 67.515, 116.208, 97.24, 90.15, 98.67
R / Rfree (%) 18.2 / 22.5

Other elements in 1l9m:

The structure of Three-Dimensional Structure of the Human Transglutaminase 3 Enzyme: Binding of Calcium Ions Change Structure For Activation also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Calcium (Ca) 2 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Three-Dimensional Structure of the Human Transglutaminase 3 Enzyme: Binding of Calcium Ions Change Structure For Activation (pdb code 1l9m). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Three-Dimensional Structure of the Human Transglutaminase 3 Enzyme: Binding of Calcium Ions Change Structure For Activation, PDB code: 1l9m:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 1l9m

Go back to Bromine Binding Sites List in 1l9m
Bromine binding site 1 out of 2 in the Three-Dimensional Structure of the Human Transglutaminase 3 Enzyme: Binding of Calcium Ions Change Structure For Activation


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Three-Dimensional Structure of the Human Transglutaminase 3 Enzyme: Binding of Calcium Ions Change Structure For Activation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br700

b:25.2
occ:0.70
 O A:HOH1108 3.1 28.9 1.0
O A:HOH1005 3.3 30.9 1.0
NH1 A:ARG587 3.4 25.0 1.0
N A:ILE590 3.5 16.4 1.0
CD A:ARG169 3.5 28.5 1.0
O A:HOH1007 3.7 40.9 1.0
CA A:ILE589 3.7 15.6 1.0
CG A:ARG169 3.8 26.1 1.0
C A:ILE589 4.1 16.2 1.0
NE A:ARG587 4.1 24.2 1.0
CB A:ILE589 4.1 15.6 1.0
O A:ASP588 4.2 19.4 1.0
CZ A:ARG587 4.2 24.2 1.0
CG2 A:ILE589 4.3 14.5 1.0
CB A:ASN168 4.4 22.1 1.0
O A:ILE590 4.5 18.5 1.0
CA A:ILE590 4.5 16.9 1.0
CB A:ILE590 4.5 16.5 1.0
CG2 A:VAL488 4.5 25.6 1.0
CD1 A:LEU492 4.7 27.6 1.0
N A:ILE589 4.8 16.9 1.0
NE A:ARG169 4.8 30.8 1.0
CG1 A:ILE590 4.9 15.5 1.0
C A:ASP588 4.9 17.8 1.0
ND2 A:ASN168 5.0 24.2 1.0
C A:ILE590 5.0 17.6 1.0

Bromine binding site 2 out of 2 in 1l9m

Go back to Bromine Binding Sites List in 1l9m
Bromine binding site 2 out of 2 in the Three-Dimensional Structure of the Human Transglutaminase 3 Enzyme: Binding of Calcium Ions Change Structure For Activation


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Three-Dimensional Structure of the Human Transglutaminase 3 Enzyme: Binding of Calcium Ions Change Structure For Activation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br703

b:32.0
occ:0.70
 O B:HOH1093 3.0 46.1 1.0
NH1 B:ARG587 3.2 30.8 1.0
N B:ILE590 3.5 20.3 1.0
CD B:ARG169 3.5 30.4 1.0
CA B:ILE589 3.7 20.2 1.0
CG B:ARG169 3.8 28.7 1.0
NE B:ARG587 4.0 31.2 1.0
CZ B:ARG587 4.0 31.4 1.0
C B:ILE589 4.0 20.7 1.0
CB B:ILE589 4.1 19.5 1.0
O B:ASP588 4.2 23.8 1.0
CB B:ASN168 4.2 27.9 1.0
CG2 B:ILE589 4.3 18.6 1.0
CA B:ILE590 4.5 20.7 1.0
O B:ILE590 4.5 21.5 1.0
CB B:ILE590 4.5 20.8 1.0
CD1 B:LEU492 4.5 32.9 1.0
CG2 B:VAL488 4.7 34.3 1.0
CG1 B:ILE590 4.8 20.0 1.0
N B:ILE589 4.8 21.2 1.0
NE B:ARG169 4.9 32.3 1.0
C B:ASP588 4.9 22.2 1.0
ND2 B:ASN168 5.0 31.2 1.0
C B:ILE590 5.0 20.5 1.0

Reference:

B.Ahvazi, H.C.Kim, S.H.Kee, Z.Nemes, P.M.Steinert. Three-Dimensional Structure of the Human Transglutaminase 3 Enzyme: Binding of Calcium Ions Changes Structure For Activation. Embo J. V. 21 2055 2002.
ISSN: ISSN 0261-4189
PubMed: 11980702
DOI: 10.1093/EMBOJ/21.9.2055
Page generated: Wed Jul 10 16:51:20 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy