Bromine in PDB 1n8b: Bacteriophage T4 Baseplate Structural Protein GP8

The structure of Bacteriophage T4 Baseplate Structural Protein GP8, PDB code: 1n8b was solved by P.G.Leiman, M.M.Shneider, V.A.Kostyuchenko, P.R.Chipman, V.V.Mesyanzhinov, M.G.Rossmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.98 / 2.90
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	65.203, 65.766, 79.647, 93.04, 100.32, 91.93
R / Rfree (%)	22.2 / 30

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40;

Binding sites:

The binding sites of Bromine atom in the Bacteriophage T4 Baseplate Structural Protein GP8 (pdb code 1n8b). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 40 binding sites of Bromine where determined in the Bacteriophage T4 Baseplate Structural Protein GP8, PDB code: 1n8b:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Bromine binding site 1 out of 40 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br335 b:51.2 occ:0.94 CD A:PRO103 3.3 47.6 1.0 N A:TYR104 3.3 49.4 1.0 OG1 A:THR105 3.4 50.9 1.0 N A:THR105 3.5 53.0 1.0 CB A:TYR104 3.7 47.9 1.0 N A:PRO103 3.7 48.1 1.0 CA A:TYR104 3.8 49.8 1.0 CB A:THR105 3.8 52.0 1.0 CG A:PRO103 3.9 47.2 1.0 C A:TYR104 3.9 51.4 1.0 CA A:ASP102 3.9 52.9 1.0 C A:ASP102 4.1 50.4 1.0 CD2 A:TYR104 4.2 44.6 1.0 CA A:THR105 4.3 53.1 1.0 C A:PRO103 4.4 48.7 1.0 CG A:TYR104 4.4 46.4 1.0 CA A:PRO103 4.6 48.1 1.0 CB A:ASP102 4.8 54.6 1.0 CB A:ARG165 4.8 61.5 1.0 O A:TYR104 4.9 52.0 1.0 N A:ASP102 4.9 54.5 1.0 CB A:PRO103 5.0 48.4 1.0

Bromine binding site 2 out of 40 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br336 b:28.6 occ:0.54 O A:HOH346 3.1 24.4 1.0 CB A:PRO118 3.7 32.9 1.0 CG A:PRO118 3.8 31.6 1.0 CD1 A:TYR119 3.9 26.7 1.0 CD A:PRO118 4.0 30.5 1.0 N A:TYR119 4.4 31.0 1.0 CE1 A:TYR119 4.5 25.2 1.0 N A:PRO118 4.7 32.1 1.0 CA A:PRO118 4.8 31.7 1.0 CG A:TYR119 4.9 28.9 1.0

Bromine binding site 3 out of 40 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br337 b:32.7 occ:0.55 ND2 B:ASN35 3.1 43.0 1.0 ND2 A:ASN23 3.2 22.3 1.0 ND2 A:ASN26 3.6 25.7 1.0 O A:LEU22 3.7 18.3 1.0 CA A:ASN23 3.7 21.7 1.0 N A:ASN23 3.8 20.6 1.0 C A:LEU22 3.8 20.7 1.0 CG A:LEU22 3.8 25.9 1.0 CB A:ASN26 3.9 22.9 1.0 CG B:ASN35 4.0 41.7 1.0 OD1 B:ASN35 4.1 41.4 1.0 CG A:ASN26 4.2 25.1 1.0 CD2 A:LEU22 4.2 28.6 1.0 CG A:ASN23 4.3 25.5 1.0 CB A:LEU22 4.4 25.4 1.0 CB B:SER27 4.4 29.2 1.0 CB A:ASN23 4.6 22.3 1.0 C A:ASN23 4.7 20.5 1.0 CA A:LEU22 4.8 22.6 1.0 O A:ASN23 4.8 17.9 1.0 OG B:SER27 4.9 30.3 1.0 OE1 A:GLU19 4.9 29.2 1.0 CD1 A:LEU22 5.0 24.3 1.0

Bromine binding site 4 out of 40 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br338 b:27.4 occ:0.47 O A:HOH349 3.0 43.0 1.0 N A:GLU214 3.1 29.6 1.0 CB A:GLU214 3.4 32.9 1.0 CD A:PRO213 3.6 24.1 1.0 O A:HOH416 3.6 44.6 1.0 N A:PRO213 3.7 25.2 1.0 CB A:TRP212 3.8 25.2 1.0 OD1 A:ASN26 3.8 26.4 1.0 CB A:PRO213 3.9 22.7 1.0 CA A:GLU214 3.9 32.3 1.0 ND2 A:ASN26 4.0 25.7 1.0 C A:PRO213 4.1 26.9 1.0 CA A:PRO213 4.1 25.8 1.0 CD1 A:LEU22 4.1 24.3 1.0 CG A:PRO213 4.2 24.0 1.0 CE2 A:TYR25 4.2 24.5 1.0 C A:TRP212 4.3 24.6 1.0 CG A:ASN26 4.4 25.1 1.0 CD2 A:TYR25 4.4 24.2 1.0 BR A:BR343 4.5 31.9 0.3 CA A:TRP212 4.6 24.4 1.0 CG A:GLU214 4.7 40.1 1.0 CG A:TRP212 4.7 27.0 1.0 OE1 A:GLU214 4.8 45.2 1.0 O A:TRP212 4.9 25.0 1.0

Bromine binding site 5 out of 40 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br339 b:41.8 occ:0.69 NZ A:LYS250 3.0 42.7 1.0 CB A:ASN201 3.6 33.9 1.0 NH2 A:ARG202 3.6 24.5 1.0 ND2 A:ASN201 3.6 31.1 1.0 CE A:LYS250 3.7 41.5 1.0 CG A:ASN201 3.9 31.8 1.0 CD A:ARG202 4.2 24.6 1.0 CD A:LYS250 4.3 39.8 1.0 CZ A:ARG202 4.6 24.7 1.0 OD1 A:ASN201 4.8 30.7 1.0 NE A:ARG202 4.8 24.0 1.0 OH A:TYR252 4.9 49.1 1.0 CA A:ASN201 5.0 31.8 1.0

Bromine binding site 6 out of 40 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br340 b:18.0 occ:0.44 OG A:SER84 3.1 20.5 1.0 N A:SER84 3.2 16.9 1.0 CB A:SER84 3.3 18.5 1.0 CA A:SER84 3.8 19.7 1.0 CD A:PRO83 3.9 15.1 1.0 CB A:LEU82 3.9 19.3 1.0 N A:PRO83 4.0 18.8 1.0 CB A:PRO83 4.1 12.6 1.0 C A:PRO83 4.2 16.6 1.0 CA A:PRO83 4.4 16.0 1.0 C A:LEU82 4.4 19.7 1.0 CG A:PRO83 4.4 13.8 1.0 CA A:LEU82 4.7 19.4 1.0 CD2 A:LEU82 4.9 20.2 1.0 CG A:LEU82 4.9 21.8 1.0

Bromine binding site 7 out of 40 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br341 b:37.4 occ:0.51 N A:LYS282 3.4 37.4 1.0 CE A:MET303 3.7 41.3 1.0 CB A:MET303 3.8 33.4 1.0 CA A:MET303 3.8 33.2 1.0 CA A:ALA281 3.9 35.1 1.0 CG A:MET303 4.0 35.4 1.0 O A:LYS282 4.2 46.8 1.0 C A:ALA281 4.2 36.5 1.0 CB A:LYS282 4.3 36.5 1.0 CA A:LYS282 4.4 39.9 1.0 CB A:ALA281 4.4 34.1 1.0 SD A:MET303 4.7 39.9 1.0 CG A:LYS282 4.7 34.3 1.0 N A:MET303 4.7 33.9 1.0 C A:LYS282 4.7 44.4 1.0 C A:MET303 4.9 32.7 1.0 N A:ARG304 4.9 31.6 1.0 O A:GLU280 4.9 29.9 1.0

Bromine binding site 8 out of 40 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br342 b:40.2 occ:0.48 NE A:ARG17 2.9 40.2 1.0 CD A:ARG17 3.1 38.8 1.0 O A:HOH378 3.1 31.0 1.0 CZ A:ARG17 3.4 41.1 1.0 ND2 A:ASN245 3.8 32.0 1.0 NH2 A:ARG17 4.0 40.5 1.0 CB A:SER14 4.0 38.9 1.0 NH1 A:ARG17 4.1 41.8 1.0 CA A:SER14 4.2 38.6 1.0 CG A:ARG17 4.5 36.8 1.0 O A:SER14 4.7 37.1 1.0 CB A:ARG17 4.8 34.8 1.0 C A:SER14 5.0 37.7 1.0

Bromine binding site 9 out of 40 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br343 b:31.9 occ:0.32 OH A:TYR25 3.1 30.8 1.0 O A:HOH398 3.1 50.5 1.0 CB A:GLU214 3.8 32.9 1.0 CE2 A:TYR25 3.8 24.5 1.0 CZ A:TYR25 3.9 28.8 1.0 N A:GLU215 4.0 34.1 1.0 CB A:GLU215 4.2 34.6 1.0 BR A:BR338 4.5 27.4 0.5 CB A:TRP212 4.5 25.2 1.0 C A:GLU214 4.6 34.6 1.0 CA A:GLU215 4.6 34.2 1.0 CA A:GLU214 4.7 32.3 1.0 CD1 A:TRP212 4.7 27.6 1.0 CG A:GLU214 4.7 40.1 1.0 OE1 A:GLU215 4.7 36.9 1.0 CG A:GLU215 4.8 35.0 1.0 CG A:TRP212 4.9 27.0 1.0

Bromine binding site 10 out of 40 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 10 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ B:Br335 b:43.8 occ:0.62 ND2 B:ASN109 3.4 55.7 1.0 N A:VAL65 3.5 31.8 1.0 CG2 A:VAL65 3.5 25.3 1.0 O B:HOH389 4.0 42.7 1.0 CB A:SER64 4.0 33.5 1.0 CA A:SER64 4.0 32.2 1.0 CB A:VAL65 4.2 27.9 1.0 C A:SER64 4.3 31.9 1.0 CG B:ASN109 4.4 56.6 1.0 CA A:VAL65 4.5 29.9 1.0 OD1 B:ASN109 4.5 57.7 1.0 O A:HOH367 4.6 42.1 1.0

P.G.Leiman, M.M.Shneider, V.A.Kostyuchenko, P.R.Chipman, V.V.Mesyanzhinov, M.G.Rossmann. Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate J.Mol.Biol. V. 328 821 2003.
ISSN: ISSN 0022-2836
PubMed: 12729757
DOI: 10.1016/S0022-2836(03)00366-8