Bromine in PDB 1p1y: Crystal Structure of A Continuous Three-Dimensional Dna Lattice From D(Ggacagatgggag)

The structure of Crystal Structure of A Continuous Three-Dimensional Dna Lattice From D(Ggacagatgggag), PDB code: 1p1y was solved by P.J.Paukstelis, J.Nowakowski, J.J.Birktoft, N.C.Seeman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.14 / 2.10
Space group	P 64
Cell size a, b, c (Å), α, β, γ (°)	40.630, 40.630, 55.270, 90.00, 90.00, 120.00
R / Rfree (%)	20.3 / 23.3

The structure of Crystal Structure of A Continuous Three-Dimensional Dna Lattice From D(Ggacagatgggag) also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Bromine atom in the Crystal Structure of A Continuous Three-Dimensional Dna Lattice From D(Ggacagatgggag) (pdb code 1p1y). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of A Continuous Three-Dimensional Dna Lattice From D(Ggacagatgggag), PDB code: 1p1y:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Crystal Structure of A Continuous Three-Dimensional Dna Lattice From D(Ggacagatgggag)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of A Continuous Three-Dimensional Dna Lattice From D(Ggacagatgggag) within 5.0Å range: probe atom residue distance (Å) B Occ X:Br4 b:48.5 occ:0.60 BR X:CBR4 0.0 48.5 0.6 C5 X:CBR4 1.9 35.9 1.0 C6 X:CBR4 2.8 36.1 1.0 C4 X:CBR4 2.9 36.5 1.0 N4 X:CBR4 3.1 39.2 1.0 OP1 X:CBR4 3.8 42.5 1.0 N1 X:CBR4 4.1 37.9 1.0 OP2 X:CBR4 4.1 38.0 1.0 N3 X:CBR4 4.1 37.1 1.0 P X:CBR4 4.3 38.0 1.0 O5' X:CBR4 4.6 37.3 1.0 C2 X:CBR4 4.6 38.0 1.0

Bromine binding site 2 out of 2 in the Crystal Structure of A Continuous Three-Dimensional Dna Lattice From D(Ggacagatgggag)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of A Continuous Three-Dimensional Dna Lattice From D(Ggacagatgggag) within 5.0Å range: probe atom residue distance (Å) B Occ X:Br8 b:50.8 occ:0.50 BR X:BRU8 0.0 50.8 0.5 C5 X:BRU8 1.8 44.7 1.0 C4 X:BRU8 2.7 44.4 1.0 O4 X:BRU8 2.8 47.4 1.0 C6 X:BRU8 2.9 44.6 1.0 C8 X:DA7 3.7 49.4 1.0 O6 X:DG9 3.7 40.2 1.0 N7 X:DA7 3.7 48.6 1.0 N3 X:BRU8 3.9 41.8 1.0 N1 X:BRU8 4.1 45.7 1.0 O X:HOH60 4.1 42.4 1.0 N9 X:DA7 4.2 50.7 1.0 C2' X:DA7 4.3 59.5 1.0 C5 X:DA7 4.4 46.8 1.0 C6 X:DG9 4.4 38.6 1.0 C2 X:BRU8 4.6 43.4 1.0 C4 X:DA7 4.7 48.1 1.0 N7 X:DG9 4.7 39.3 1.0 C5 X:DG9 4.8 38.5 1.0 C1' X:DA7 4.9 57.4 1.0

P.J.Paukstelis, J.Nowakowski, J.J.Birktoft, N.C.Seeman. Crystal Structure of A Continuous Three-Dimensional Dna Lattice. Chem.Biol. V. 11 1119 2004.
ISSN: ISSN 1074-5521
PubMed: 15324813
DOI: 10.1016/J.CHEMBIOL.2004.05.021