Atomistry » Bromine » PDB 1p2x-1to3 » 1q3o
Atomistry »
  Bromine »
    PDB 1p2x-1to3 »
      1q3o »

Bromine in PDB 1q3o: Crystal Structure of the Shank Pdz-Ligand Complex Reveals A Class I Pdz Interaction and A Novel Pdz-Pdz Dimerization

Protein crystallography data

The structure of Crystal Structure of the Shank Pdz-Ligand Complex Reveals A Class I Pdz Interaction and A Novel Pdz-Pdz Dimerization, PDB code: 1q3o was solved by Y.J.Im, J.H.Lee, S.H.Park, S.J.Park, S.-H.Rho, G.B.Kang, E.Kim, S.H.Eom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.73 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 42.000, 50.340, 51.770, 90.00, 106.30, 90.00
R / Rfree (%) 23.4 / 25.1

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of the Shank Pdz-Ligand Complex Reveals A Class I Pdz Interaction and A Novel Pdz-Pdz Dimerization (pdb code 1q3o). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 5 binding sites of Bromine where determined in the Crystal Structure of the Shank Pdz-Ligand Complex Reveals A Class I Pdz Interaction and A Novel Pdz-Pdz Dimerization, PDB code: 1q3o:
Jump to Bromine binding site number: 1; 2; 3; 4; 5;

Bromine binding site 1 out of 5 in 1q3o

Go back to Bromine Binding Sites List in 1q3o
Bromine binding site 1 out of 5 in the Crystal Structure of the Shank Pdz-Ligand Complex Reveals A Class I Pdz Interaction and A Novel Pdz-Pdz Dimerization


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the Shank Pdz-Ligand Complex Reveals A Class I Pdz Interaction and A Novel Pdz-Pdz Dimerization within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br101

b:56.1
occ:1.00
ND2 A:ASN668 3.0 28.4 1.0
BR A:BR102 3.1 63.9 1.0
CA A:GLN665 3.5 19.3 1.0
O A:HOH10 3.8 20.9 1.0
CB A:GLN665 3.8 20.9 1.0
CG A:GLN665 3.9 18.9 1.0
CG A:ASN668 4.1 28.6 1.0
N A:GLN665 4.1 20.4 1.0
CB A:ASN668 4.2 24.4 1.0
O A:ARG664 4.4 18.4 1.0
C A:ARG664 4.4 20.8 1.0
C A:GLN665 4.7 19.6 1.0
CG A:ARG664 4.8 32.2 1.0
O A:GLN665 4.8 18.4 1.0
OE1 A:GLN665 4.9 20.4 1.0
CD A:GLN665 4.9 20.9 1.0

Bromine binding site 2 out of 5 in 1q3o

Go back to Bromine Binding Sites List in 1q3o
Bromine binding site 2 out of 5 in the Crystal Structure of the Shank Pdz-Ligand Complex Reveals A Class I Pdz Interaction and A Novel Pdz-Pdz Dimerization


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of the Shank Pdz-Ligand Complex Reveals A Class I Pdz Interaction and A Novel Pdz-Pdz Dimerization within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br102

b:63.9
occ:1.00
O A:HOH16 3.1 22.8 1.0
BR A:BR101 3.1 56.1 1.0
O A:HOH10 3.5 20.9 1.0
CB A:ARG664 3.7 27.4 1.0
CG A:ARG664 3.7 32.2 1.0
N A:GLN665 3.8 20.4 1.0
CD A:ARG664 3.9 36.9 1.0
CB A:GLN665 4.2 20.9 1.0
CA A:GLN665 4.2 19.3 1.0
C A:ARG664 4.3 20.8 1.0
CA A:ARG664 4.6 21.4 1.0
NE A:ARG664 4.7 41.5 1.0
ND2 A:ASN668 5.0 28.4 1.0

Bromine binding site 3 out of 5 in 1q3o

Go back to Bromine Binding Sites List in 1q3o
Bromine binding site 3 out of 5 in the Crystal Structure of the Shank Pdz-Ligand Complex Reveals A Class I Pdz Interaction and A Novel Pdz-Pdz Dimerization


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of the Shank Pdz-Ligand Complex Reveals A Class I Pdz Interaction and A Novel Pdz-Pdz Dimerization within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br105

b:65.8
occ:1.00
O A:HOH37 3.0 28.6 1.0
O A:HOH64 3.5 48.4 1.0
NZ A:LYS660 3.5 37.8 1.0
CE A:LYS660 3.8 32.5 1.0
CD A:PRO620 3.8 25.1 1.0
CG B:PRO620 3.9 33.2 1.0
CG1 B:VAL659 4.0 31.7 1.0
CB B:VAL659 4.1 32.8 1.0
CD B:LYS660 4.1 45.2 1.0
CG2 A:THR619 4.2 28.4 1.0
CG B:LYS660 4.3 41.0 1.0
OD1 B:ASN657 4.4 32.5 1.0
CG2 B:VAL659 4.5 32.8 1.0
ND2 B:ASN657 4.5 36.3 1.0
CA A:THR619 4.5 26.0 1.0
CD B:PRO620 4.5 31.2 1.0
OG1 A:THR619 4.7 28.2 1.0
CB A:THR619 4.7 27.1 1.0
N A:PRO620 4.8 24.6 1.0
OE2 A:GLU617 4.8 45.7 1.0
O A:PHE618 4.8 26.7 1.0
CG B:ASN657 4.9 33.5 1.0
CG A:PRO620 4.9 26.6 1.0
CB B:PRO620 5.0 30.3 1.0

Bromine binding site 4 out of 5 in 1q3o

Go back to Bromine Binding Sites List in 1q3o
Bromine binding site 4 out of 5 in the Crystal Structure of the Shank Pdz-Ligand Complex Reveals A Class I Pdz Interaction and A Novel Pdz-Pdz Dimerization


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of the Shank Pdz-Ligand Complex Reveals A Class I Pdz Interaction and A Novel Pdz-Pdz Dimerization within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br103

b:43.9
occ:1.00
O B:HOH49 3.3 36.5 1.0
CD B:PRO622 3.4 25.2 1.0
O A:HOH71 3.7 40.2 1.0
N B:ALA623 3.7 27.6 1.0
N B:PRO622 3.9 25.6 1.0
CB B:PRO622 3.9 26.1 1.0
CG B:PRO622 4.0 24.4 1.0
CB B:THR621 4.0 23.9 1.0
CB B:ALA623 4.1 30.0 1.0
CG A:GLU589 4.2 25.2 1.0
CD A:LYS680 4.4 24.6 1.0
CA B:PRO622 4.4 27.2 1.0
OG1 B:THR621 4.5 26.8 1.0
CA B:ALA623 4.5 27.8 1.0
C B:PRO622 4.5 27.1 1.0
CG1 A:VAL682 4.6 17.5 1.0
CE1 B:TYR585 4.6 29.5 1.0
C B:THR621 4.7 25.2 1.0
CG2 A:ILE651 4.7 17.9 1.0
CB A:GLU589 4.7 22.2 1.0
CZ B:TYR585 4.8 30.1 1.0
CG2 B:THR621 4.9 22.6 1.0
CA B:THR621 4.9 25.1 1.0
OH B:TYR585 4.9 30.8 1.0
CD A:GLU589 4.9 29.7 1.0

Bromine binding site 5 out of 5 in 1q3o

Go back to Bromine Binding Sites List in 1q3o
Bromine binding site 5 out of 5 in the Crystal Structure of the Shank Pdz-Ligand Complex Reveals A Class I Pdz Interaction and A Novel Pdz-Pdz Dimerization


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Crystal Structure of the Shank Pdz-Ligand Complex Reveals A Class I Pdz Interaction and A Novel Pdz-Pdz Dimerization within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br104

b:63.3
occ:1.00
OE1 B:GLN628 3.3 31.9 1.0
N B:HIS663 3.4 33.7 1.0
CD2 B:LEU627 3.8 30.2 1.0
CA B:GLY662 3.9 32.9 1.0
CG B:LEU627 4.0 30.5 1.0
CB B:HIS663 4.0 34.5 1.0
CA B:GLY608 4.1 43.3 1.0
C B:GLY662 4.1 34.0 1.0
CD B:GLN628 4.2 29.1 1.0
CA B:HIS663 4.2 33.9 1.0
NE2 B:GLN628 4.5 26.5 1.0
C B:GLY608 4.6 46.0 1.0
N B:ALA609 4.7 48.7 1.0
O B:VAL661 4.7 31.5 1.0
CD1 B:LEU627 4.8 30.1 1.0
O B:HOH44 4.9 41.5 1.0

Reference:

Y.J.Im, J.H.Lee, S.H.Park, S.J.Park, S.-H.Rho, G.B.Kang, E.Kim, S.H.Eom. Crystal Structure of the Shank Pdz-Ligand Complex Reveals A Class I Pdz Interaction and A Novel Pdz-Pdz Dimerization J.Biol.Chem. V. 278 48099 2003.
ISSN: ISSN 0021-9258
PubMed: 12954649
DOI: 10.1074/JBC.M306919200
Page generated: Sat Dec 12 02:03:38 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy