Bromine in PDB 1qbp: Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs
Protein crystallography data
The structure of Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs, PDB code: 1qbp
was solved by
A.C.Anderson,
R.H.O'neil,
D.J.Filman,
C.A.Frederick,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
999.00 /
2.10
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
104.450,
24.270,
104.450,
90.00,
118.76,
90.00
|
R / Rfree (%)
|
21.7 /
25.3
|
Bromine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Bromine atom in the Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs
(pdb code 1qbp). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 12 binding sites of Bromine where determined in the
Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs, PDB code: 1qbp:
Jump to Bromine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Bromine binding site 1 out
of 12 in 1qbp
Go back to
Bromine Binding Sites List in 1qbp
Bromine binding site 1 out
of 12 in the Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br3
b:37.7
occ:1.00
|
BR
|
A:CBV3
|
0.0
|
37.7
|
1.0
|
C5
|
A:CBV3
|
1.9
|
28.6
|
1.0
|
C6
|
A:CBV3
|
2.8
|
28.0
|
1.0
|
C4
|
A:CBV3
|
2.9
|
27.9
|
1.0
|
N4
|
A:CBV3
|
3.1
|
29.0
|
1.0
|
N7
|
A:G2
|
3.4
|
16.8
|
1.0
|
C5
|
A:G2
|
3.5
|
13.8
|
1.0
|
C8
|
A:G2
|
3.5
|
16.6
|
1.0
|
C4
|
A:G2
|
3.7
|
15.1
|
1.0
|
N9
|
A:G2
|
3.7
|
15.4
|
1.0
|
O2P
|
A:CBV3
|
3.9
|
21.9
|
1.0
|
N1
|
A:CBV3
|
4.1
|
27.3
|
1.0
|
C3'
|
A:G2
|
4.1
|
22.6
|
1.0
|
C6
|
A:G2
|
4.1
|
14.7
|
1.0
|
N3
|
A:CBV3
|
4.1
|
25.4
|
1.0
|
C2'
|
A:G2
|
4.3
|
24.0
|
1.0
|
O5'
|
A:G2
|
4.4
|
28.1
|
1.0
|
N3
|
A:G2
|
4.4
|
12.1
|
1.0
|
BR
|
A:CBV4
|
4.4
|
35.0
|
1.0
|
C1'
|
A:G2
|
4.5
|
20.2
|
1.0
|
O5'
|
A:CBV3
|
4.6
|
22.1
|
1.0
|
C2
|
A:CBV3
|
4.6
|
27.6
|
1.0
|
O6
|
A:G2
|
4.6
|
13.4
|
1.0
|
N1
|
A:G2
|
4.7
|
13.4
|
1.0
|
OP1
|
A:G2
|
4.7
|
33.3
|
1.0
|
P
|
A:CBV3
|
4.7
|
24.2
|
1.0
|
C2
|
A:G2
|
4.8
|
14.2
|
1.0
|
O3'
|
A:G2
|
4.9
|
25.1
|
1.0
|
|
Bromine binding site 2 out
of 12 in 1qbp
Go back to
Bromine Binding Sites List in 1qbp
Bromine binding site 2 out
of 12 in the Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br4
b:35.0
occ:1.00
|
BR
|
A:CBV4
|
0.0
|
35.0
|
1.0
|
C5
|
A:CBV4
|
1.9
|
21.6
|
1.0
|
C6
|
A:CBV4
|
2.8
|
19.3
|
1.0
|
C4
|
A:CBV4
|
2.9
|
16.0
|
1.0
|
N4
|
A:CBV4
|
3.1
|
7.3
|
1.0
|
C5
|
A:CBV3
|
3.6
|
28.6
|
1.0
|
C4
|
A:CBV3
|
3.7
|
27.9
|
1.0
|
O2P
|
A:CBV4
|
3.7
|
25.4
|
1.0
|
C6
|
A:CBV3
|
3.8
|
28.0
|
1.0
|
O
|
A:HOH7205
|
3.8
|
5.1
|
0.5
|
N3
|
A:CBV3
|
3.9
|
25.4
|
1.0
|
N1
|
A:CBV3
|
4.0
|
27.3
|
1.0
|
C2
|
A:CBV3
|
4.0
|
27.6
|
1.0
|
N1
|
A:CBV4
|
4.1
|
21.3
|
1.0
|
N3
|
A:CBV4
|
4.1
|
17.4
|
1.0
|
N4
|
A:CBV3
|
4.2
|
29.0
|
1.0
|
O5'
|
A:CBV4
|
4.3
|
23.7
|
1.0
|
BR
|
A:CBV3
|
4.4
|
37.7
|
1.0
|
C3'
|
A:CBV3
|
4.4
|
22.8
|
1.0
|
C2'
|
A:CBV3
|
4.5
|
25.9
|
1.0
|
P
|
A:CBV4
|
4.6
|
26.0
|
1.0
|
C2
|
A:CBV4
|
4.6
|
18.2
|
1.0
|
O2
|
A:CBV3
|
4.7
|
24.6
|
1.0
|
C1'
|
A:CBV3
|
4.8
|
26.5
|
1.0
|
|
Bromine binding site 3 out
of 12 in 1qbp
Go back to
Bromine Binding Sites List in 1qbp
Bromine binding site 3 out
of 12 in the Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 3 of Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br18
b:31.0
occ:1.00
|
BR
|
B:CBV18
|
0.0
|
31.0
|
1.0
|
C5
|
B:CBV18
|
1.9
|
18.0
|
1.0
|
C4
|
B:CBV18
|
2.8
|
9.1
|
1.0
|
C6
|
B:CBV18
|
2.9
|
12.0
|
1.0
|
N4
|
B:CBV18
|
3.0
|
12.7
|
1.0
|
O
|
B:HOH7226
|
3.3
|
16.4
|
0.5
|
N7
|
B:G17
|
3.5
|
14.3
|
1.0
|
C8
|
B:G17
|
3.5
|
15.3
|
1.0
|
C5
|
B:G17
|
3.6
|
10.8
|
1.0
|
N9
|
B:G17
|
3.7
|
18.6
|
1.0
|
C4
|
B:G17
|
3.7
|
13.6
|
1.0
|
OP1
|
B:G17
|
3.8
|
41.6
|
1.0
|
O2P
|
B:CBV18
|
3.8
|
16.1
|
1.0
|
O5'
|
B:G17
|
3.8
|
39.6
|
1.0
|
C3'
|
B:G17
|
4.0
|
23.4
|
1.0
|
N3
|
B:CBV18
|
4.1
|
14.7
|
1.0
|
BR
|
B:CBV19
|
4.1
|
19.6
|
1.0
|
N1
|
B:CBV18
|
4.1
|
11.4
|
1.0
|
C6
|
B:G17
|
4.2
|
9.7
|
1.0
|
C2'
|
B:G17
|
4.3
|
20.8
|
1.0
|
P
|
B:G17
|
4.4
|
43.4
|
1.0
|
N3
|
B:G17
|
4.4
|
12.2
|
1.0
|
O5'
|
B:CBV18
|
4.5
|
13.4
|
1.0
|
C1'
|
B:G17
|
4.5
|
20.7
|
1.0
|
P
|
B:CBV18
|
4.6
|
18.7
|
1.0
|
C2
|
B:CBV18
|
4.6
|
14.5
|
1.0
|
O6
|
B:G17
|
4.8
|
6.7
|
1.0
|
N1
|
B:G17
|
4.8
|
7.9
|
1.0
|
O3'
|
B:G17
|
4.8
|
19.0
|
1.0
|
C2
|
B:G17
|
4.9
|
13.4
|
1.0
|
O4'
|
B:G17
|
4.9
|
27.9
|
1.0
|
C4'
|
B:G17
|
4.9
|
28.2
|
1.0
|
C5'
|
B:G17
|
5.0
|
32.6
|
1.0
|
|
Bromine binding site 4 out
of 12 in 1qbp
Go back to
Bromine Binding Sites List in 1qbp
Bromine binding site 4 out
of 12 in the Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 4 of Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br19
b:19.6
occ:1.00
|
BR
|
B:CBV19
|
0.0
|
19.6
|
1.0
|
C5
|
B:CBV19
|
1.9
|
11.0
|
1.0
|
C4
|
B:CBV19
|
2.8
|
8.1
|
1.0
|
C6
|
B:CBV19
|
2.9
|
5.5
|
1.0
|
N4
|
B:CBV19
|
3.0
|
3.4
|
1.0
|
C5
|
B:CBV18
|
3.5
|
18.0
|
1.0
|
C6
|
B:CBV18
|
3.6
|
12.0
|
1.0
|
O2P
|
B:CBV19
|
3.6
|
4.4
|
1.0
|
O
|
B:HOH6200
|
3.7
|
3.4
|
0.5
|
C4
|
B:CBV18
|
3.8
|
9.1
|
1.0
|
N1
|
B:CBV18
|
3.9
|
11.4
|
1.0
|
N3
|
B:CBV18
|
4.1
|
14.7
|
1.0
|
N3
|
B:CBV19
|
4.1
|
7.6
|
1.0
|
C2
|
B:CBV18
|
4.1
|
14.5
|
1.0
|
N1
|
B:CBV19
|
4.1
|
3.4
|
1.0
|
BR
|
B:CBV18
|
4.1
|
31.0
|
1.0
|
C3'
|
B:CBV18
|
4.2
|
7.7
|
1.0
|
C2'
|
B:CBV18
|
4.3
|
11.7
|
1.0
|
N4
|
B:CBV18
|
4.4
|
12.7
|
1.0
|
O5'
|
B:CBV19
|
4.4
|
6.8
|
1.0
|
P
|
B:CBV19
|
4.6
|
7.5
|
1.0
|
C2
|
B:CBV19
|
4.6
|
7.2
|
1.0
|
O5'
|
B:CBV18
|
4.7
|
13.4
|
1.0
|
C1'
|
B:CBV18
|
4.7
|
9.9
|
1.0
|
N7
|
B:A20
|
4.7
|
5.8
|
1.0
|
O2P
|
B:CBV18
|
4.8
|
16.1
|
1.0
|
O2
|
B:CBV18
|
4.9
|
11.1
|
1.0
|
O3'
|
B:CBV18
|
5.0
|
8.2
|
1.0
|
|
Bromine binding site 5 out
of 12 in 1qbp
Go back to
Bromine Binding Sites List in 1qbp
Bromine binding site 5 out
of 12 in the Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 5 of Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Br33
b:41.6
occ:1.00
|
BR
|
C:CBV33
|
0.0
|
41.6
|
1.0
|
C5
|
C:CBV33
|
1.9
|
30.9
|
1.0
|
C6
|
C:CBV33
|
2.8
|
28.8
|
1.0
|
C4
|
C:CBV33
|
2.9
|
29.1
|
1.0
|
N4
|
C:CBV33
|
3.2
|
19.4
|
1.0
|
N7
|
C:G32
|
3.7
|
33.8
|
1.0
|
O2P
|
C:CBV33
|
3.7
|
36.9
|
1.0
|
C5
|
C:G32
|
3.8
|
33.8
|
1.0
|
C8
|
C:G32
|
3.8
|
34.6
|
1.0
|
C4
|
C:G32
|
3.9
|
32.4
|
1.0
|
N9
|
C:G32
|
3.9
|
34.2
|
1.0
|
C3'
|
C:G32
|
4.0
|
38.6
|
1.0
|
N1
|
C:CBV33
|
4.1
|
24.2
|
1.0
|
N3
|
C:CBV33
|
4.1
|
26.2
|
1.0
|
C6
|
C:G32
|
4.3
|
30.4
|
1.0
|
BR
|
C:CBV34
|
4.4
|
35.6
|
1.0
|
C5'
|
C:G32
|
4.4
|
44.2
|
1.0
|
O5'
|
C:CBV33
|
4.5
|
30.5
|
1.0
|
C2'
|
C:G32
|
4.5
|
37.9
|
1.0
|
P
|
C:CBV33
|
4.6
|
36.6
|
1.0
|
C2
|
C:CBV33
|
4.6
|
26.7
|
1.0
|
N3
|
C:G32
|
4.6
|
30.0
|
1.0
|
C4'
|
C:G32
|
4.7
|
41.0
|
1.0
|
C1'
|
C:G32
|
4.7
|
37.9
|
1.0
|
O3'
|
C:G32
|
4.8
|
37.1
|
1.0
|
O6
|
C:G32
|
4.8
|
33.0
|
1.0
|
N1
|
C:G32
|
4.9
|
25.8
|
1.0
|
OP1
|
C:G32
|
4.9
|
57.7
|
1.0
|
|
Bromine binding site 6 out
of 12 in 1qbp
Go back to
Bromine Binding Sites List in 1qbp
Bromine binding site 6 out
of 12 in the Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 6 of Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Br34
b:35.6
occ:1.00
|
BR
|
C:CBV34
|
0.0
|
35.6
|
1.0
|
C5
|
C:CBV34
|
1.9
|
22.8
|
1.0
|
C6
|
C:CBV34
|
2.8
|
21.0
|
1.0
|
C4
|
C:CBV34
|
2.9
|
24.6
|
1.0
|
N4
|
C:CBV34
|
3.2
|
21.7
|
1.0
|
C4
|
C:CBV33
|
3.4
|
29.1
|
1.0
|
C5
|
C:CBV33
|
3.4
|
30.9
|
1.0
|
N3
|
C:CBV33
|
3.6
|
26.2
|
1.0
|
C6
|
C:CBV33
|
3.6
|
28.8
|
1.0
|
O2P
|
C:CBV34
|
3.6
|
29.1
|
1.0
|
C2
|
C:CBV33
|
3.7
|
26.7
|
1.0
|
N1
|
C:CBV33
|
3.7
|
24.2
|
1.0
|
N4
|
C:CBV33
|
4.0
|
19.4
|
1.0
|
N1
|
C:CBV34
|
4.1
|
17.6
|
1.0
|
N3
|
C:CBV34
|
4.2
|
18.3
|
1.0
|
C3'
|
C:CBV33
|
4.2
|
24.3
|
1.0
|
O5'
|
C:CBV34
|
4.3
|
22.8
|
1.0
|
C2'
|
C:CBV33
|
4.3
|
22.0
|
1.0
|
BR
|
C:CBV33
|
4.4
|
41.6
|
1.0
|
O2
|
C:CBV33
|
4.4
|
24.9
|
1.0
|
P
|
C:CBV34
|
4.5
|
22.9
|
1.0
|
C1'
|
C:CBV33
|
4.6
|
21.3
|
1.0
|
C2
|
C:CBV34
|
4.7
|
19.4
|
1.0
|
O5'
|
C:CBV33
|
4.9
|
30.5
|
1.0
|
O3'
|
C:CBV33
|
4.9
|
27.4
|
1.0
|
|
Bromine binding site 7 out
of 12 in 1qbp
Go back to
Bromine Binding Sites List in 1qbp
Bromine binding site 7 out
of 12 in the Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 7 of Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Br48
b:31.6
occ:1.00
|
BR
|
D:CBV48
|
0.0
|
31.6
|
1.0
|
C5
|
D:CBV48
|
1.9
|
14.7
|
1.0
|
C6
|
D:CBV48
|
2.8
|
11.7
|
1.0
|
C4
|
D:CBV48
|
2.8
|
13.1
|
1.0
|
N4
|
D:CBV48
|
3.0
|
5.6
|
1.0
|
OP2
|
D:G47
|
3.5
|
49.4
|
1.0
|
N7
|
D:G47
|
3.5
|
8.6
|
1.0
|
C8
|
D:G47
|
3.6
|
14.9
|
1.0
|
C5
|
D:G47
|
3.6
|
10.2
|
1.0
|
N9
|
D:G47
|
3.8
|
16.7
|
1.0
|
C4
|
D:G47
|
3.8
|
12.7
|
1.0
|
O5'
|
D:G47
|
3.9
|
46.3
|
1.0
|
BR
|
D:CBV49
|
4.0
|
27.4
|
1.0
|
N3
|
D:CBV48
|
4.1
|
11.7
|
1.0
|
N1
|
D:CBV48
|
4.1
|
9.0
|
1.0
|
C3'
|
D:G47
|
4.1
|
29.4
|
1.0
|
O2P
|
D:CBV48
|
4.2
|
19.1
|
1.0
|
C6
|
D:G47
|
4.2
|
15.6
|
1.0
|
P
|
D:G47
|
4.3
|
50.6
|
1.0
|
C2'
|
D:G47
|
4.4
|
26.3
|
1.0
|
N3
|
D:G47
|
4.5
|
9.0
|
1.0
|
C1'
|
D:G47
|
4.6
|
25.9
|
1.0
|
O5'
|
D:CBV48
|
4.6
|
17.6
|
1.0
|
C2
|
D:CBV48
|
4.6
|
12.5
|
1.0
|
O
|
D:HOH7328
|
4.7
|
14.2
|
0.5
|
O6
|
D:G47
|
4.8
|
18.0
|
1.0
|
N1
|
D:G47
|
4.8
|
12.8
|
1.0
|
C2
|
D:G47
|
4.9
|
7.3
|
1.0
|
P
|
D:CBV48
|
4.9
|
18.2
|
1.0
|
N4
|
D:CBV49
|
4.9
|
18.0
|
1.0
|
C4'
|
D:G47
|
4.9
|
33.9
|
1.0
|
O4'
|
D:G47
|
4.9
|
32.8
|
1.0
|
C5'
|
D:G47
|
5.0
|
39.5
|
1.0
|
|
Bromine binding site 8 out
of 12 in 1qbp
Go back to
Bromine Binding Sites List in 1qbp
Bromine binding site 8 out
of 12 in the Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 8 of Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Br49
b:27.4
occ:1.00
|
BR
|
D:CBV49
|
0.0
|
27.4
|
1.0
|
C5
|
D:CBV49
|
1.9
|
12.3
|
1.0
|
C6
|
D:CBV49
|
2.8
|
9.7
|
1.0
|
C4
|
D:CBV49
|
2.8
|
11.4
|
1.0
|
N4
|
D:CBV49
|
3.0
|
18.0
|
1.0
|
C5
|
D:CBV48
|
3.4
|
14.7
|
1.0
|
C6
|
D:CBV48
|
3.4
|
11.7
|
1.0
|
C4
|
D:CBV48
|
3.7
|
13.1
|
1.0
|
O2P
|
D:CBV49
|
3.7
|
13.1
|
1.0
|
N1
|
D:CBV48
|
3.7
|
9.0
|
1.0
|
N3
|
D:CBV48
|
4.0
|
11.7
|
1.0
|
C2
|
D:CBV48
|
4.0
|
12.5
|
1.0
|
BR
|
D:CBV48
|
4.0
|
31.6
|
1.0
|
N3
|
D:CBV49
|
4.1
|
4.7
|
1.0
|
C3'
|
D:CBV48
|
4.1
|
12.8
|
1.0
|
N1
|
D:CBV49
|
4.1
|
3.9
|
1.0
|
C2'
|
D:CBV48
|
4.1
|
14.8
|
1.0
|
N4
|
D:CBV48
|
4.3
|
5.6
|
1.0
|
O5'
|
D:CBV49
|
4.4
|
9.7
|
1.0
|
C1'
|
D:CBV48
|
4.5
|
9.6
|
1.0
|
P
|
D:CBV49
|
4.6
|
12.5
|
1.0
|
C2
|
D:CBV49
|
4.6
|
2.4
|
1.0
|
N7
|
D:A50
|
4.7
|
10.4
|
1.0
|
O2
|
D:CBV48
|
4.8
|
16.1
|
1.0
|
O5'
|
D:CBV48
|
4.8
|
17.6
|
1.0
|
O3'
|
D:CBV48
|
4.9
|
14.9
|
1.0
|
|
Bromine binding site 9 out
of 12 in 1qbp
Go back to
Bromine Binding Sites List in 1qbp
Bromine binding site 9 out
of 12 in the Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 9 of Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Br63
b:39.9
occ:1.00
|
BR
|
E:CBV63
|
0.0
|
39.9
|
1.0
|
C5
|
E:CBV63
|
1.9
|
27.3
|
1.0
|
C6
|
E:CBV63
|
2.8
|
25.0
|
1.0
|
C4
|
E:CBV63
|
2.9
|
22.4
|
1.0
|
N4
|
E:CBV63
|
3.0
|
16.4
|
1.0
|
N7
|
E:G62
|
3.5
|
21.2
|
1.0
|
C5
|
E:G62
|
3.5
|
21.3
|
1.0
|
O2P
|
E:CBV63
|
3.6
|
26.5
|
1.0
|
C8
|
E:G62
|
3.6
|
19.1
|
1.0
|
C4
|
E:G62
|
3.8
|
20.9
|
1.0
|
N9
|
E:G62
|
3.8
|
22.1
|
1.0
|
C6
|
E:G62
|
4.1
|
18.1
|
1.0
|
N3
|
E:CBV63
|
4.1
|
19.6
|
1.0
|
N1
|
E:CBV63
|
4.1
|
23.4
|
1.0
|
C3'
|
E:G62
|
4.1
|
23.6
|
1.0
|
C2'
|
E:G62
|
4.3
|
22.9
|
1.0
|
O5'
|
E:CBV63
|
4.4
|
22.8
|
1.0
|
O5'
|
E:G62
|
4.4
|
29.9
|
1.0
|
N3
|
E:G62
|
4.5
|
17.2
|
1.0
|
BR
|
E:CBV64
|
4.5
|
32.3
|
1.0
|
P
|
E:CBV63
|
4.5
|
25.6
|
1.0
|
O6
|
E:G62
|
4.6
|
19.0
|
1.0
|
OP1
|
E:G62
|
4.6
|
34.9
|
1.0
|
C2
|
E:CBV63
|
4.6
|
22.8
|
1.0
|
C1'
|
E:G62
|
4.7
|
22.0
|
1.0
|
N1
|
E:G62
|
4.7
|
22.6
|
1.0
|
C2
|
E:G62
|
4.8
|
20.3
|
1.0
|
O3'
|
E:G62
|
4.9
|
22.7
|
1.0
|
|
Bromine binding site 10 out
of 12 in 1qbp
Go back to
Bromine Binding Sites List in 1qbp
Bromine binding site 10 out
of 12 in the Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 10 of Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Br64
b:32.3
occ:1.00
|
BR
|
E:CBV64
|
0.0
|
32.3
|
1.0
|
C5
|
E:CBV64
|
1.9
|
23.3
|
1.0
|
C6
|
E:CBV64
|
2.8
|
18.6
|
1.0
|
C4
|
E:CBV64
|
2.8
|
23.9
|
1.0
|
N4
|
E:CBV64
|
3.0
|
22.8
|
1.0
|
C5
|
E:CBV63
|
3.6
|
27.3
|
1.0
|
O2P
|
E:CBV64
|
3.7
|
19.9
|
1.0
|
C4
|
E:CBV63
|
3.7
|
22.4
|
1.0
|
C6
|
E:CBV63
|
3.7
|
25.0
|
1.0
|
N3
|
E:CBV63
|
3.9
|
19.6
|
1.0
|
N1
|
E:CBV63
|
3.9
|
23.4
|
1.0
|
C2
|
E:CBV63
|
4.0
|
22.8
|
1.0
|
N1
|
E:CBV64
|
4.1
|
19.0
|
1.0
|
N3
|
E:CBV64
|
4.1
|
21.6
|
1.0
|
O5'
|
E:CBV64
|
4.3
|
19.8
|
1.0
|
N4
|
E:CBV63
|
4.3
|
16.4
|
1.0
|
C3'
|
E:CBV63
|
4.4
|
27.7
|
1.0
|
C2'
|
E:CBV63
|
4.5
|
29.3
|
1.0
|
BR
|
E:CBV63
|
4.5
|
39.9
|
1.0
|
P
|
E:CBV64
|
4.5
|
21.8
|
1.0
|
C2
|
E:CBV64
|
4.6
|
18.7
|
1.0
|
O2
|
E:CBV63
|
4.7
|
20.2
|
1.0
|
C1'
|
E:CBV63
|
4.8
|
27.6
|
1.0
|
O3'
|
E:CBV63
|
5.0
|
26.5
|
1.0
|
|
Reference:
A.C.Anderson,
R.H.O'neil,
D.J.Filman,
C.A.Frederick.
Crystal Structure of A Brominated Rna Helix with Four Mismatched Base Pairs: An Investigation Into Rna Conformational Variability. Biochemistry V. 38 12577 1999.
ISSN: ISSN 0006-2960
PubMed: 10504226
DOI: 10.1021/BI9904508
Page generated: Wed Jul 10 17:14:07 2024
|