Bromine in PDB 1r71: Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna
Protein crystallography data
The structure of Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna, PDB code: 1r71
was solved by
D.Khare,
G.Ziegelin,
E.Lanka,
U.Heinemann,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
2.20
|
Space group
|
P 32 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
110.440,
110.440,
160.530,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
19.5 /
25
|
Bromine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Bromine atom in the Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna
(pdb code 1r71). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 12 binding sites of Bromine where determined in the
Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna, PDB code: 1r71:
Jump to Bromine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Bromine binding site 1 out
of 12 in 1r71
Go back to
Bromine Binding Sites List in 1r71
Bromine binding site 1 out
of 12 in the Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Br2
b:32.2
occ:0.25
|
BR
|
E:BRU2
|
0.0
|
32.2
|
0.2
|
BR
|
I:BRU2
|
1.1
|
31.3
|
0.2
|
C5
|
E:BRU2
|
1.9
|
13.6
|
0.5
|
O
|
E:HOH33
|
2.5
|
45.4
|
1.0
|
C5
|
I:BRU2
|
2.7
|
26.6
|
0.5
|
C6
|
E:BRU2
|
2.8
|
21.1
|
0.5
|
C4
|
E:BRU2
|
3.0
|
14.5
|
0.5
|
O4
|
E:BRU2
|
3.2
|
14.8
|
0.5
|
C6
|
I:BRU2
|
3.3
|
28.6
|
0.5
|
C2'
|
I:DC1
|
3.7
|
30.4
|
0.5
|
O
|
E:HOH41
|
3.9
|
46.4
|
1.0
|
C8
|
E:DA1
|
3.9
|
23.6
|
0.5
|
O
|
F:HOH189
|
4.0
|
62.2
|
1.0
|
N1
|
E:BRU2
|
4.0
|
20.2
|
0.5
|
O
|
E:HOH24
|
4.0
|
37.3
|
1.0
|
C4
|
I:BRU2
|
4.0
|
25.5
|
0.5
|
C6
|
I:DC1
|
4.0
|
33.8
|
0.5
|
C2'
|
E:DA1
|
4.1
|
26.1
|
0.5
|
CG
|
A:PRO182
|
4.1
|
33.3
|
1.0
|
N7
|
E:DA1
|
4.1
|
27.7
|
0.5
|
N3
|
E:BRU2
|
4.2
|
12.3
|
0.5
|
N9
|
E:DA1
|
4.2
|
28.2
|
0.5
|
CB
|
A:PRO182
|
4.4
|
29.2
|
1.0
|
O4
|
I:BRU2
|
4.4
|
27.1
|
0.5
|
N1
|
I:DC1
|
4.5
|
29.1
|
0.5
|
C2
|
E:BRU2
|
4.6
|
18.7
|
0.5
|
C5
|
I:DC1
|
4.6
|
28.7
|
0.5
|
O
|
F:HOH94
|
4.6
|
14.4
|
0.5
|
C5
|
E:DA1
|
4.6
|
22.8
|
0.5
|
C1'
|
I:DC1
|
4.6
|
32.2
|
0.5
|
C4
|
E:DA1
|
4.7
|
23.2
|
0.5
|
C1'
|
E:DA1
|
4.7
|
31.7
|
0.5
|
N1
|
I:BRU2
|
4.7
|
28.8
|
0.5
|
O
|
I:HOH35
|
4.7
|
54.3
|
1.0
|
O4
|
E:DT3
|
4.7
|
15.1
|
0.5
|
C3'
|
I:DC1
|
4.9
|
32.1
|
0.5
|
O5'
|
I:DC1
|
4.9
|
38.6
|
0.5
|
|
Bromine binding site 2 out
of 12 in 1r71
Go back to
Bromine Binding Sites List in 1r71
Bromine binding site 2 out
of 12 in the Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Br2
b:31.3
occ:0.25
|
BR
|
I:BRU2
|
0.0
|
31.3
|
0.2
|
BR
|
E:BRU2
|
1.1
|
32.2
|
0.2
|
C5
|
E:BRU2
|
1.4
|
13.6
|
0.5
|
C5
|
I:BRU2
|
1.9
|
26.6
|
0.5
|
C4
|
E:BRU2
|
2.0
|
14.5
|
0.5
|
O4
|
E:BRU2
|
2.1
|
14.8
|
0.5
|
C6
|
E:BRU2
|
2.7
|
21.1
|
0.5
|
C6
|
I:BRU2
|
2.9
|
28.6
|
0.5
|
C4
|
I:BRU2
|
3.0
|
25.5
|
0.5
|
O
|
E:HOH41
|
3.2
|
46.4
|
1.0
|
N3
|
E:BRU2
|
3.3
|
12.3
|
0.5
|
O4
|
I:BRU2
|
3.3
|
27.1
|
0.5
|
O
|
E:HOH33
|
3.6
|
45.4
|
1.0
|
O
|
F:HOH189
|
3.7
|
62.2
|
1.0
|
N1
|
E:BRU2
|
3.7
|
20.2
|
0.5
|
O4
|
E:DT3
|
3.8
|
15.1
|
0.5
|
C2
|
E:BRU2
|
3.9
|
18.7
|
0.5
|
C6
|
I:DC1
|
3.9
|
33.8
|
0.5
|
O
|
F:HOH94
|
4.1
|
14.4
|
0.5
|
N7
|
E:DA1
|
4.1
|
27.7
|
0.5
|
C8
|
E:DA1
|
4.1
|
23.6
|
0.5
|
N1
|
I:BRU2
|
4.1
|
28.8
|
0.5
|
C5
|
I:DC1
|
4.2
|
28.7
|
0.5
|
N3
|
I:BRU2
|
4.2
|
27.0
|
0.5
|
C2'
|
I:DC1
|
4.2
|
30.4
|
0.5
|
C5
|
E:DA1
|
4.3
|
22.8
|
0.5
|
N9
|
E:DA1
|
4.3
|
28.2
|
0.5
|
N1
|
I:DC1
|
4.4
|
29.1
|
0.5
|
C4
|
E:DA1
|
4.4
|
23.2
|
0.5
|
CG
|
A:PRO182
|
4.6
|
33.3
|
1.0
|
O4
|
I:DT3
|
4.6
|
31.1
|
0.5
|
CB
|
A:PRO182
|
4.6
|
29.2
|
1.0
|
O
|
E:HOH24
|
4.6
|
37.3
|
1.0
|
C2
|
I:BRU2
|
4.7
|
24.6
|
0.5
|
N6
|
F:DA15
|
4.7
|
13.2
|
0.5
|
C2'
|
E:DA1
|
4.7
|
26.1
|
0.5
|
C4
|
E:DT3
|
4.8
|
19.5
|
0.5
|
C7
|
I:DT3
|
4.8
|
23.0
|
0.5
|
C4
|
I:DC1
|
4.8
|
28.7
|
0.5
|
C1'
|
I:DC1
|
4.9
|
32.2
|
0.5
|
C6
|
E:DA1
|
4.9
|
24.9
|
0.5
|
C7
|
E:DT3
|
5.0
|
26.7
|
0.5
|
C1'
|
E:DA1
|
5.0
|
31.7
|
0.5
|
|
Bromine binding site 3 out
of 12 in 1r71
Go back to
Bromine Binding Sites List in 1r71
Bromine binding site 3 out
of 12 in the Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 3 of Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Br17
b:45.1
occ:0.50
|
BR
|
I:BRU17
|
0.0
|
45.1
|
0.5
|
C5
|
I:BRU17
|
1.9
|
35.8
|
0.5
|
N7
|
E:DG17
|
2.2
|
22.1
|
0.5
|
C8
|
E:DG17
|
2.6
|
21.0
|
0.5
|
C4
|
I:BRU17
|
2.8
|
33.3
|
0.5
|
O4
|
I:BRU17
|
2.9
|
30.5
|
0.5
|
C6
|
I:BRU17
|
2.9
|
35.1
|
0.5
|
C8
|
I:DA16
|
3.4
|
20.5
|
0.5
|
C5
|
E:DG17
|
3.5
|
17.9
|
0.5
|
N7
|
I:DA16
|
3.5
|
19.4
|
0.5
|
O
|
I:HOH37
|
3.6
|
27.9
|
0.5
|
C8
|
E:DA16
|
3.7
|
21.3
|
0.5
|
N9
|
I:DA16
|
3.8
|
22.3
|
0.5
|
C2'
|
E:DA16
|
3.9
|
34.1
|
0.5
|
C5
|
I:DA16
|
3.9
|
20.3
|
0.5
|
N9
|
E:DG17
|
3.9
|
21.9
|
0.5
|
N9
|
E:DA16
|
4.0
|
25.6
|
0.5
|
N7
|
E:DA16
|
4.1
|
19.7
|
0.5
|
C4
|
I:DA16
|
4.1
|
21.5
|
0.5
|
N3
|
I:BRU17
|
4.1
|
30.0
|
0.5
|
N1
|
I:BRU17
|
4.2
|
31.4
|
0.5
|
C2'
|
I:DA16
|
4.2
|
28.5
|
0.5
|
C6
|
E:DG17
|
4.4
|
21.3
|
0.5
|
C4
|
E:DG17
|
4.4
|
16.8
|
0.5
|
C1'
|
E:DA16
|
4.4
|
30.8
|
0.5
|
O6
|
E:DG17
|
4.4
|
27.6
|
0.5
|
C1'
|
I:DA16
|
4.4
|
31.2
|
0.5
|
C4
|
E:DA16
|
4.5
|
17.6
|
0.5
|
C5
|
E:DA16
|
4.5
|
19.8
|
0.5
|
C2
|
I:BRU17
|
4.6
|
29.6
|
0.5
|
O
|
I:HOH27
|
4.7
|
56.4
|
1.0
|
C6
|
I:DA16
|
4.7
|
18.8
|
0.5
|
N3
|
I:DA16
|
4.9
|
18.9
|
0.5
|
OP2
|
I:BRU17
|
5.0
|
26.8
|
0.5
|
O4'
|
E:DG17
|
5.0
|
21.8
|
0.5
|
|
Bromine binding site 4 out
of 12 in 1r71
Go back to
Bromine Binding Sites List in 1r71
Bromine binding site 4 out
of 12 in the Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 4 of Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Br2
b:44.3
occ:0.25
|
BR
|
F:BRU2
|
0.0
|
44.3
|
0.2
|
BR
|
J:BRU2
|
1.2
|
31.4
|
0.2
|
C5
|
F:BRU2
|
1.9
|
27.2
|
0.5
|
O
|
J:HOH31
|
2.5
|
54.5
|
1.0
|
C5
|
J:BRU2
|
2.7
|
20.4
|
0.5
|
C6
|
F:BRU2
|
2.8
|
31.7
|
0.5
|
C4
|
F:BRU2
|
3.0
|
24.9
|
0.5
|
O4
|
F:BRU2
|
3.2
|
27.2
|
0.5
|
C6
|
J:BRU2
|
3.4
|
24.0
|
0.5
|
C8
|
J:DA1
|
3.6
|
21.0
|
0.5
|
O
|
F:HOH160
|
3.7
|
53.7
|
1.0
|
C2'
|
J:DA1
|
3.7
|
31.3
|
0.5
|
O
|
J:HOH26
|
3.9
|
40.4
|
1.0
|
C4
|
J:BRU2
|
4.0
|
18.5
|
0.5
|
N9
|
J:DA1
|
4.0
|
23.6
|
0.5
|
N1
|
F:BRU2
|
4.1
|
30.3
|
0.5
|
C6
|
F:DC1
|
4.1
|
35.9
|
0.5
|
N3
|
F:BRU2
|
4.2
|
19.4
|
0.5
|
N7
|
J:DA1
|
4.2
|
18.7
|
0.5
|
CG
|
B:PRO182
|
4.2
|
37.1
|
1.0
|
C2'
|
F:DC1
|
4.3
|
37.7
|
0.5
|
O
|
F:HOH211
|
4.3
|
59.2
|
1.0
|
O4
|
J:BRU2
|
4.3
|
19.9
|
0.5
|
C1'
|
J:DA1
|
4.3
|
31.9
|
0.5
|
C5
|
F:DC1
|
4.4
|
34.3
|
0.5
|
CB
|
B:PRO182
|
4.4
|
34.4
|
1.0
|
N1
|
F:DC1
|
4.5
|
34.1
|
0.5
|
C2
|
F:BRU2
|
4.6
|
27.4
|
0.5
|
N1
|
J:BRU2
|
4.7
|
26.9
|
0.5
|
O4
|
F:DT3
|
4.8
|
20.4
|
0.5
|
C4
|
J:DA1
|
4.8
|
19.3
|
0.5
|
O
|
F:HOH91
|
4.8
|
30.9
|
1.0
|
C1'
|
F:DC1
|
4.9
|
38.5
|
0.5
|
C5
|
J:DA1
|
4.9
|
16.5
|
0.5
|
C4
|
F:DC1
|
5.0
|
28.4
|
0.5
|
|
Bromine binding site 5 out
of 12 in 1r71
Go back to
Bromine Binding Sites List in 1r71
Bromine binding site 5 out
of 12 in the Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 5 of Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Br17
b:49.1
occ:0.50
|
BR
|
F:BRU17
|
0.0
|
49.1
|
0.5
|
C5
|
F:BRU17
|
1.9
|
38.5
|
0.5
|
N7
|
J:DG17
|
2.1
|
26.8
|
0.5
|
C8
|
J:DG17
|
2.6
|
22.5
|
0.5
|
O
|
F:HOH188
|
2.8
|
69.3
|
1.0
|
C6
|
F:BRU17
|
3.0
|
36.8
|
0.5
|
C4
|
F:BRU17
|
3.0
|
32.7
|
0.5
|
O4
|
F:BRU17
|
3.1
|
29.5
|
0.5
|
C2'
|
F:DA16
|
3.2
|
33.8
|
0.5
|
C5
|
J:DG17
|
3.4
|
19.0
|
0.5
|
N9
|
F:DA16
|
3.5
|
35.7
|
0.5
|
O
|
F:HOH157
|
3.5
|
33.7
|
0.5
|
C8
|
F:DA16
|
3.7
|
35.7
|
0.5
|
C8
|
J:DA16
|
3.7
|
23.2
|
0.5
|
C1'
|
F:DA16
|
3.7
|
36.5
|
0.5
|
N7
|
J:DA16
|
3.8
|
20.4
|
0.5
|
N9
|
J:DG17
|
3.9
|
20.6
|
0.5
|
C4
|
F:DA16
|
3.9
|
36.9
|
0.5
|
N9
|
J:DA16
|
4.1
|
22.7
|
0.5
|
C5
|
J:DA16
|
4.2
|
20.4
|
0.5
|
N7
|
F:DA16
|
4.2
|
37.3
|
0.5
|
N1
|
F:BRU17
|
4.2
|
34.1
|
0.5
|
N3
|
F:BRU17
|
4.2
|
32.3
|
0.5
|
C6
|
J:DG17
|
4.3
|
21.5
|
0.5
|
O6
|
J:DG17
|
4.3
|
29.8
|
0.5
|
C5
|
F:DA16
|
4.3
|
33.4
|
0.5
|
C4
|
J:DG17
|
4.3
|
22.2
|
0.5
|
C2'
|
J:DA16
|
4.3
|
24.6
|
0.5
|
C4
|
J:DA16
|
4.4
|
17.7
|
0.5
|
N3
|
F:DA16
|
4.6
|
37.1
|
0.5
|
C3'
|
F:DA16
|
4.6
|
35.7
|
0.5
|
O
|
F:HOH150
|
4.7
|
26.4
|
0.5
|
C2
|
F:BRU17
|
4.7
|
33.5
|
0.5
|
C1'
|
J:DA16
|
4.8
|
23.5
|
0.5
|
O4'
|
J:DG17
|
4.8
|
26.6
|
0.5
|
C6
|
J:DA16
|
4.9
|
17.4
|
0.5
|
O4'
|
F:DA16
|
5.0
|
38.9
|
0.5
|
C1'
|
J:DG17
|
5.0
|
30.5
|
0.5
|
|
Bromine binding site 6 out
of 12 in 1r71
Go back to
Bromine Binding Sites List in 1r71
Bromine binding site 6 out
of 12 in the Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 6 of Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Br2
b:31.4
occ:0.25
|
BR
|
J:BRU2
|
0.0
|
31.4
|
0.2
|
BR
|
F:BRU2
|
1.2
|
44.3
|
0.2
|
C5
|
F:BRU2
|
1.4
|
27.2
|
0.5
|
C5
|
J:BRU2
|
1.9
|
20.4
|
0.5
|
C4
|
F:BRU2
|
2.0
|
24.9
|
0.5
|
O4
|
F:BRU2
|
2.2
|
27.2
|
0.5
|
C6
|
F:BRU2
|
2.7
|
31.7
|
0.5
|
C6
|
J:BRU2
|
2.9
|
24.0
|
0.5
|
C4
|
J:BRU2
|
2.9
|
18.5
|
0.5
|
O
|
F:HOH160
|
3.1
|
53.7
|
1.0
|
O4
|
J:BRU2
|
3.2
|
19.9
|
0.5
|
N3
|
F:BRU2
|
3.3
|
19.4
|
0.5
|
O
|
J:HOH31
|
3.6
|
54.5
|
1.0
|
C8
|
J:DA1
|
3.7
|
21.0
|
0.5
|
N1
|
F:BRU2
|
3.7
|
30.3
|
0.5
|
O4
|
F:DT3
|
3.9
|
20.4
|
0.5
|
O
|
F:HOH211
|
3.9
|
59.2
|
1.0
|
N7
|
J:DA1
|
3.9
|
18.7
|
0.5
|
C2
|
F:BRU2
|
4.0
|
27.4
|
0.5
|
N9
|
J:DA1
|
4.1
|
23.6
|
0.5
|
N1
|
J:BRU2
|
4.1
|
26.9
|
0.5
|
N3
|
J:BRU2
|
4.1
|
18.2
|
0.5
|
O
|
F:HOH91
|
4.2
|
30.9
|
1.0
|
C5
|
F:DC1
|
4.3
|
34.3
|
0.5
|
C6
|
F:DC1
|
4.3
|
35.9
|
0.5
|
C2'
|
J:DA1
|
4.4
|
31.3
|
0.5
|
C5
|
J:DA1
|
4.5
|
16.5
|
0.5
|
CG
|
B:PRO182
|
4.5
|
37.1
|
1.0
|
O
|
J:HOH26
|
4.5
|
40.4
|
1.0
|
CB
|
B:PRO182
|
4.5
|
34.4
|
1.0
|
N1
|
F:DC1
|
4.6
|
34.1
|
0.5
|
C4
|
J:DA1
|
4.6
|
19.3
|
0.5
|
C4
|
F:DC1
|
4.6
|
28.4
|
0.5
|
C2
|
J:BRU2
|
4.6
|
18.9
|
0.5
|
O4
|
J:DT3
|
4.6
|
30.9
|
0.5
|
C7
|
J:DT3
|
4.7
|
35.5
|
0.5
|
C1'
|
J:DA1
|
4.7
|
31.9
|
0.5
|
C4
|
F:DT3
|
4.7
|
14.2
|
0.5
|
C2'
|
F:DC1
|
4.8
|
37.7
|
0.5
|
N6
|
I:DA15
|
4.8
|
23.7
|
0.5
|
N3
|
F:DC1
|
4.9
|
27.7
|
0.5
|
C2
|
F:DC1
|
4.9
|
30.5
|
0.5
|
C7
|
F:DT3
|
5.0
|
17.4
|
0.5
|
|
Bromine binding site 7 out
of 12 in 1r71
Go back to
Bromine Binding Sites List in 1r71
Bromine binding site 7 out
of 12 in the Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 7 of Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Br2
b:31.5
occ:0.25
|
BR
|
G:BRU2
|
0.0
|
31.5
|
0.2
|
BR
|
L:BRU2
|
1.2
|
42.0
|
0.2
|
C5
|
L:BRU2
|
1.7
|
20.2
|
0.5
|
C5
|
G:BRU2
|
1.9
|
24.6
|
0.5
|
O4
|
L:BRU2
|
2.1
|
24.4
|
0.5
|
C4
|
L:BRU2
|
2.1
|
18.9
|
0.5
|
C6
|
G:BRU2
|
2.8
|
24.7
|
0.5
|
C6
|
L:BRU2
|
2.9
|
25.7
|
0.5
|
C4
|
G:BRU2
|
2.9
|
27.0
|
0.5
|
O4
|
G:BRU2
|
3.2
|
28.1
|
0.5
|
N3
|
L:BRU2
|
3.4
|
18.1
|
0.5
|
N1
|
L:BRU2
|
3.9
|
26.3
|
0.5
|
O4
|
L:DT3
|
3.9
|
15.1
|
0.5
|
C8
|
G:DA1
|
4.0
|
26.4
|
0.5
|
N1
|
G:BRU2
|
4.0
|
28.5
|
0.5
|
O
|
L:HOH205
|
4.1
|
38.0
|
1.0
|
C2
|
L:BRU2
|
4.1
|
24.9
|
0.5
|
C2'
|
G:DA1
|
4.2
|
28.7
|
0.5
|
N3
|
G:BRU2
|
4.2
|
25.6
|
0.5
|
N9
|
G:DA1
|
4.2
|
26.9
|
0.5
|
N7
|
G:DA1
|
4.2
|
30.4
|
0.5
|
C5
|
L:DC1
|
4.3
|
35.7
|
0.5
|
C6
|
L:DC1
|
4.3
|
34.0
|
0.5
|
C7
|
G:DT3
|
4.4
|
33.7
|
0.5
|
N6
|
K:DA15
|
4.5
|
16.2
|
0.5
|
C4
|
G:DA1
|
4.5
|
23.0
|
0.5
|
C5
|
G:DA1
|
4.5
|
24.2
|
0.5
|
C2
|
G:BRU2
|
4.6
|
21.8
|
0.5
|
C1'
|
G:DA1
|
4.6
|
30.9
|
0.5
|
CG
|
D:PRO182
|
4.7
|
35.4
|
1.0
|
O
|
G:HOH22
|
4.7
|
44.0
|
1.0
|
CB
|
D:PRO182
|
4.7
|
32.4
|
1.0
|
N1
|
L:DC1
|
4.7
|
31.2
|
0.5
|
C4
|
L:DC1
|
4.7
|
32.5
|
0.5
|
C2'
|
L:DC1
|
4.8
|
38.5
|
0.5
|
C4
|
L:DT3
|
4.8
|
21.5
|
0.5
|
O4
|
G:DT3
|
4.9
|
26.8
|
0.5
|
|
Bromine binding site 8 out
of 12 in 1r71
Go back to
Bromine Binding Sites List in 1r71
Bromine binding site 8 out
of 12 in the Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 8 of Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Br2
b:42.0
occ:0.25
|
BR
|
L:BRU2
|
0.0
|
42.0
|
0.2
|
BR
|
G:BRU2
|
1.2
|
31.5
|
0.2
|
C5
|
L:BRU2
|
1.9
|
20.2
|
0.5
|
C5
|
G:BRU2
|
2.7
|
24.6
|
0.5
|
C6
|
L:BRU2
|
2.8
|
25.7
|
0.5
|
C4
|
L:BRU2
|
3.0
|
18.9
|
0.5
|
C6
|
G:BRU2
|
3.1
|
24.7
|
0.5
|
O4
|
L:BRU2
|
3.2
|
24.4
|
0.5
|
C2'
|
G:DA1
|
3.4
|
28.7
|
0.5
|
O
|
G:HOH22
|
3.8
|
44.0
|
1.0
|
C4
|
G:BRU2
|
4.0
|
27.0
|
0.5
|
N1
|
L:BRU2
|
4.0
|
26.3
|
0.5
|
C8
|
G:DA1
|
4.0
|
26.4
|
0.5
|
C2'
|
L:DC1
|
4.0
|
38.5
|
0.5
|
N9
|
G:DA1
|
4.1
|
26.9
|
0.5
|
N3
|
L:BRU2
|
4.2
|
18.1
|
0.5
|
C6
|
L:DC1
|
4.2
|
34.0
|
0.5
|
C1'
|
G:DA1
|
4.2
|
30.9
|
0.5
|
CG
|
D:PRO182
|
4.3
|
35.4
|
1.0
|
O4
|
G:BRU2
|
4.4
|
28.1
|
0.5
|
CB
|
D:PRO182
|
4.4
|
32.4
|
1.0
|
N1
|
G:BRU2
|
4.5
|
28.5
|
0.5
|
C5
|
L:DC1
|
4.5
|
35.7
|
0.5
|
C2
|
L:BRU2
|
4.6
|
24.9
|
0.5
|
N7
|
G:DA1
|
4.6
|
30.4
|
0.5
|
N1
|
L:DC1
|
4.6
|
31.2
|
0.5
|
O
|
L:HOH205
|
4.7
|
38.0
|
1.0
|
C3'
|
G:DA1
|
4.7
|
34.1
|
0.5
|
O4
|
L:DT3
|
4.7
|
15.1
|
0.5
|
C4
|
G:DA1
|
4.8
|
23.0
|
0.5
|
C7
|
G:DT3
|
4.8
|
33.7
|
0.5
|
OP2
|
G:BRU2
|
4.8
|
33.1
|
0.5
|
C1'
|
L:DC1
|
4.9
|
38.9
|
0.5
|
C5'
|
G:BRU2
|
5.0
|
32.3
|
0.5
|
|
Bromine binding site 9 out
of 12 in 1r71
Go back to
Bromine Binding Sites List in 1r71
Bromine binding site 9 out
of 12 in the Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 9 of Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Br17
b:51.0
occ:0.50
|
BR
|
L:BRU17
|
0.0
|
51.0
|
0.5
|
C5
|
L:BRU17
|
1.9
|
34.2
|
0.5
|
N7
|
G:DG17
|
2.5
|
16.9
|
0.5
|
C4
|
L:BRU17
|
2.8
|
32.6
|
0.5
|
O4
|
L:BRU17
|
2.9
|
24.2
|
0.5
|
C6
|
L:BRU17
|
2.9
|
37.7
|
0.5
|
C8
|
G:DG17
|
3.0
|
17.5
|
0.5
|
O
|
L:HOH335
|
3.5
|
53.8
|
1.0
|
N7
|
L:DA16
|
3.6
|
27.4
|
0.5
|
C8
|
G:DA16
|
3.6
|
34.8
|
0.5
|
C8
|
L:DA16
|
3.7
|
25.4
|
0.5
|
N9
|
G:DA16
|
3.7
|
31.6
|
0.5
|
C2'
|
G:DA16
|
3.7
|
28.0
|
0.5
|
C5
|
G:DG17
|
3.8
|
16.2
|
0.5
|
N7
|
G:DA16
|
4.0
|
33.5
|
0.5
|
N3
|
L:BRU17
|
4.1
|
26.5
|
0.5
|
N1
|
L:BRU17
|
4.1
|
36.0
|
0.5
|
C5
|
L:DA16
|
4.2
|
24.3
|
0.5
|
C1'
|
G:DA16
|
4.2
|
33.0
|
0.5
|
C4
|
G:DA16
|
4.2
|
30.3
|
0.5
|
N9
|
G:DG17
|
4.3
|
18.6
|
0.5
|
N9
|
L:DA16
|
4.3
|
26.4
|
0.5
|
O6
|
G:DG17
|
4.4
|
25.3
|
0.5
|
C5
|
G:DA16
|
4.4
|
25.8
|
0.5
|
C6
|
G:DG17
|
4.5
|
17.6
|
0.5
|
C2'
|
L:DA16
|
4.6
|
30.0
|
0.5
|
C2
|
L:BRU17
|
4.6
|
34.9
|
0.5
|
C4
|
L:DA16
|
4.6
|
22.3
|
0.5
|
O
|
G:HOH34
|
4.6
|
38.6
|
0.5
|
C4
|
G:DG17
|
4.7
|
22.7
|
0.5
|
C6
|
L:DA16
|
4.9
|
25.3
|
0.5
|
|
Bromine binding site 10 out
of 12 in 1r71
Go back to
Bromine Binding Sites List in 1r71
Bromine binding site 10 out
of 12 in the Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 10 of Crystal Structure of the Dna Binding Domain of Korb in Complex with the Operator Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Br2
b:47.2
occ:0.25
|
BR
|
H:BRU2
|
0.0
|
47.2
|
0.2
|
BR
|
K:BRU2
|
1.2
|
30.2
|
0.2
|
C5
|
H:BRU2
|
1.9
|
33.9
|
0.5
|
O
|
K:HOH37
|
2.6
|
43.7
|
1.0
|
C6
|
H:BRU2
|
2.8
|
30.3
|
0.5
|
C5
|
K:BRU2
|
3.0
|
23.2
|
0.5
|
C4
|
H:BRU2
|
3.0
|
28.7
|
0.5
|
O4
|
H:BRU2
|
3.2
|
29.8
|
0.5
|
C8
|
K:DA1
|
3.7
|
31.6
|
0.5
|
C6
|
K:BRU2
|
3.7
|
28.4
|
0.5
|
C2'
|
H:DC1
|
3.8
|
36.0
|
0.5
|
C6
|
H:DC1
|
3.9
|
40.5
|
0.5
|
C2'
|
K:DA1
|
4.0
|
31.3
|
0.5
|
N1
|
H:BRU2
|
4.1
|
25.6
|
0.5
|
C4
|
K:BRU2
|
4.1
|
24.9
|
0.5
|
N7
|
K:DA1
|
4.2
|
27.7
|
0.5
|
N3
|
H:BRU2
|
4.2
|
24.1
|
0.5
|
O
|
K:HOH26
|
4.2
|
38.9
|
1.0
|
O4
|
K:BRU2
|
4.2
|
25.6
|
0.5
|
N1
|
H:DC1
|
4.2
|
37.9
|
0.5
|
C5
|
H:DC1
|
4.3
|
36.8
|
0.5
|
N9
|
K:DA1
|
4.3
|
28.2
|
0.5
|
CG
|
C:PRO182
|
4.4
|
40.1
|
1.0
|
C1'
|
H:DC1
|
4.5
|
38.5
|
0.5
|
C2
|
H:BRU2
|
4.6
|
26.2
|
0.5
|
C1'
|
K:DA1
|
4.7
|
30.5
|
0.5
|
CB
|
C:PRO182
|
4.8
|
38.0
|
1.0
|
O4
|
H:DT3
|
4.8
|
25.8
|
0.5
|
O
|
G:HOH28
|
4.9
|
11.7
|
0.5
|
O5'
|
H:DC1
|
4.9
|
44.0
|
0.5
|
C2
|
H:DC1
|
4.9
|
37.0
|
0.5
|
O
|
H:HOH38
|
4.9
|
62.4
|
1.0
|
C5
|
K:DA1
|
4.9
|
25.0
|
0.5
|
C4
|
H:DC1
|
5.0
|
34.3
|
0.5
|
|
Reference:
D.Khare,
G.Ziegelin,
E.Lanka,
U.Heinemann.
Sequence-Specific Dna Binding Determined By Contacts Outside the Helix-Turn-Helix Motif of the Parb Homolog Korb. Nat.Struct.Mol.Biol. V. 11 656 2004.
ISSN: ISSN 1545-9993
PubMed: 15170177
DOI: 10.1038/NSMB773
Page generated: Wed Jul 10 17:15:48 2024
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