Bromine in PDB 1rlg: Molecular Basis of Box C/D Rna-Protein Interaction: Co-Crystal Structure of the Archaeal Srnp Intiation Complex

The structure of Molecular Basis of Box C/D Rna-Protein Interaction: Co-Crystal Structure of the Archaeal Srnp Intiation Complex, PDB code: 1rlg was solved by T.Moore, Y.Zhang, M.O.Fenley, H.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.25 / 2.70
Space group	P 2 3
Cell size a, b, c (Å), α, β, γ (°)	120.584, 120.584, 120.584, 90.00, 90.00, 90.00
R / Rfree (%)	23.5 / 26

The binding sites of Bromine atom in the Molecular Basis of Box C/D Rna-Protein Interaction: Co-Crystal Structure of the Archaeal Srnp Intiation Complex (pdb code 1rlg). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 6 binding sites of Bromine where determined in the Molecular Basis of Box C/D Rna-Protein Interaction: Co-Crystal Structure of the Archaeal Srnp Intiation Complex, PDB code: 1rlg:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6;

Bromine binding site 1 out of 6 in the Molecular Basis of Box C/D Rna-Protein Interaction: Co-Crystal Structure of the Archaeal Srnp Intiation Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Molecular Basis of Box C/D Rna-Protein Interaction: Co-Crystal Structure of the Archaeal Srnp Intiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Br3 b:71.5 occ:1.00 BR C:5BU3 0.0 71.5 1.0 C5 C:5BU3 1.6 61.0 1.0 C6 C:5BU3 2.6 58.4 1.0 C4 C:5BU3 2.7 59.1 1.0 O4 C:5BU3 3.0 58.1 1.0 OP2 C:5BU3 3.7 46.5 1.0 C6 C:C2 3.7 35.6 1.0 C5 C:C2 3.7 33.1 1.0 C4 C:C2 3.7 33.6 1.0 N1 C:C2 3.7 38.0 1.0 C2 C:C2 3.8 35.9 1.0 N3 C:C2 3.8 34.4 1.0 N3 C:5BU3 3.9 57.2 1.0 N1 C:5BU3 3.9 53.6 1.0 C3' C:C2 4.1 40.7 1.0 C2' C:C2 4.1 40.3 1.0 O5' C:5BU3 4.3 42.3 1.0 N4 C:C4 4.3 52.3 1.0 N4 C:C2 4.4 36.2 1.0 O2 C:C2 4.4 36.9 1.0 C2 C:5BU3 4.4 55.5 1.0 C1' C:C2 4.5 39.0 1.0 P C:5BU3 4.5 43.7 1.0 C5 C:C4 4.7 53.8 1.0 O3' C:C2 4.8 43.5 1.0 C4 C:C4 4.8 52.6 1.0 O5' C:C2 4.9 43.6 1.0

Bromine binding site 2 out of 6 in the Molecular Basis of Box C/D Rna-Protein Interaction: Co-Crystal Structure of the Archaeal Srnp Intiation Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Molecular Basis of Box C/D Rna-Protein Interaction: Co-Crystal Structure of the Archaeal Srnp Intiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Br5 b:83.1 occ:1.00 BR C:5BU5 0.0 83.1 1.0 C5 C:5BU5 1.6 75.7 1.0 C6 C:5BU5 2.6 72.5 1.0 C4 C:5BU5 2.6 75.4 1.0 O4 C:5BU5 3.0 74.8 1.0 O6 C:G6 3.3 62.3 1.0 C5 C:C4 3.5 53.8 1.0 OP2 C:5BU5 3.6 53.4 1.0 C6 C:G6 3.6 62.0 1.0 NZ A:LYS37 3.7 58.1 1.0 C5 C:G6 3.8 62.7 1.0 N7 C:G6 3.8 61.1 1.0 C4 C:C4 3.8 52.6 1.0 N3 C:5BU5 3.9 72.1 1.0 N1 C:5BU5 3.9 70.4 1.0 C6 C:C4 3.9 53.8 1.0 N4 C:C4 4.1 52.3 1.0 C2 C:5BU5 4.4 70.9 1.0 N1 C:G6 4.5 62.9 1.0 N3 C:C4 4.5 50.8 1.0 O5' C:5BU5 4.5 58.0 1.0 N1 C:C4 4.5 53.8 1.0 P C:5BU5 4.6 55.7 1.0 C3' C:C4 4.7 52.0 1.0 C8 C:G6 4.7 61.9 1.0 C4 C:G6 4.8 63.4 1.0 C2 C:C4 4.8 52.4 1.0

Bromine binding site 3 out of 6 in the Molecular Basis of Box C/D Rna-Protein Interaction: Co-Crystal Structure of the Archaeal Srnp Intiation Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Molecular Basis of Box C/D Rna-Protein Interaction: Co-Crystal Structure of the Archaeal Srnp Intiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Br21 b:79.1 occ:1.00 BR C:5BU21 0.0 79.1 1.0 C5 C:5BU21 1.6 73.9 1.0 C6 C:5BU21 2.6 73.0 1.0 C4 C:5BU21 2.6 74.0 1.0 O4 C:5BU21 3.0 76.2 1.0 OP2 C:A20 3.1 63.7 1.0 O5' C:A20 3.3 64.7 1.0 OP2 C:5BU21 3.4 63.0 1.0 P C:A20 3.8 65.5 1.0 N3 C:5BU21 3.9 72.8 1.0 N1 C:5BU21 3.9 72.1 1.0 C8 C:A20 3.9 61.7 1.0 N7 C:A20 4.0 62.0 1.0 C3' C:A20 4.0 63.5 1.0 O3' C:G19 4.1 63.0 1.0 N9 C:A20 4.4 62.2 1.0 P C:5BU21 4.4 61.1 1.0 O5' C:5BU21 4.4 61.5 1.0 C2 C:5BU21 4.4 72.8 1.0 C5 C:A20 4.5 61.7 1.0 N2 C:G6 4.5 63.6 1.0 C5' C:A20 4.6 64.6 1.0 O2' C:G19 4.6 61.2 1.0 N7 C:G22 4.6 60.0 1.0 O3' C:A20 4.7 62.3 1.0 C4 C:A20 4.7 62.4 1.0 C2' C:A20 4.7 64.2 1.0 C4' C:A20 4.8 63.6 1.0 O6 C:G22 5.0 55.5 1.0 C1' C:A20 5.0 63.6 1.0

Bromine binding site 4 out of 6 in the Molecular Basis of Box C/D Rna-Protein Interaction: Co-Crystal Structure of the Archaeal Srnp Intiation Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Molecular Basis of Box C/D Rna-Protein Interaction: Co-Crystal Structure of the Archaeal Srnp Intiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Br3 b:66.5 occ:1.00 BR D:5BU3 0.0 66.5 1.0 C5 D:5BU3 1.6 50.0 1.0 C6 D:5BU3 2.6 47.4 1.0 C4 D:5BU3 2.6 46.6 1.0 O4 D:5BU3 3.0 44.1 1.0 C4 D:C2 3.7 37.4 1.0 C5 D:C2 3.7 36.7 1.0 OP2 D:5BU3 3.7 39.0 1.0 C6 D:C2 3.7 37.5 1.0 N3 D:C2 3.8 36.9 1.0 N1 D:C2 3.8 39.1 1.0 C2 D:C2 3.8 38.7 1.0 N3 D:5BU3 3.9 44.9 1.0 N1 D:5BU3 3.9 43.9 1.0 C3' D:C2 4.2 40.7 1.0 N4 D:C2 4.3 36.5 1.0 C2' D:C2 4.3 41.5 1.0 O5' D:5BU3 4.4 40.6 1.0 C2 D:5BU3 4.4 44.1 1.0 O2 D:C2 4.5 41.8 1.0 P D:5BU3 4.6 41.9 1.0 C1' D:C2 4.6 41.4 1.0 O5' D:C2 4.9 41.8 1.0 O3' D:C2 5.0 42.0 1.0

Bromine binding site 5 out of 6 in the Molecular Basis of Box C/D Rna-Protein Interaction: Co-Crystal Structure of the Archaeal Srnp Intiation Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Molecular Basis of Box C/D Rna-Protein Interaction: Co-Crystal Structure of the Archaeal Srnp Intiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Br5 b:64.1 occ:1.00 BR D:5BU5 0.0 64.1 1.0 C5 D:5BU5 1.6 53.9 1.0 C6 D:5BU5 2.6 50.5 1.0 C4 D:5BU5 2.6 52.6 1.0 O4 D:5BU5 3.0 51.7 1.0 O6 D:G6 3.3 37.6 1.0 C6 D:G6 3.5 36.0 1.0 C5 D:C4 3.6 28.6 1.0 C5 D:G6 3.7 35.7 1.0 N7 D:G6 3.7 36.3 1.0 C4 D:C4 3.7 29.1 1.0 NZ B:LYS37 3.8 55.9 1.0 N3 D:5BU5 3.9 50.5 1.0 N1 D:5BU5 3.9 45.7 1.0 OP2 D:5BU5 4.0 37.0 1.0 N4 D:C4 4.0 28.0 1.0 C6 D:C4 4.1 30.6 1.0 N3 D:C4 4.2 30.1 1.0 N1 D:G6 4.4 34.2 1.0 C2 D:5BU5 4.4 47.8 1.0 N1 D:C4 4.5 31.8 1.0 C2 D:C4 4.6 30.8 1.0 C8 D:G6 4.6 36.5 1.0 C4 D:G6 4.6 34.6 1.0 O5' D:5BU5 4.6 35.8 1.0 P D:5BU5 5.0 31.8 1.0 C3' D:C4 5.0 33.8 1.0

Bromine binding site 6 out of 6 in the Molecular Basis of Box C/D Rna-Protein Interaction: Co-Crystal Structure of the Archaeal Srnp Intiation Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Molecular Basis of Box C/D Rna-Protein Interaction: Co-Crystal Structure of the Archaeal Srnp Intiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Br21 b:54.9 occ:1.00 BR D:5BU21 0.0 54.9 1.0 C5 D:5BU21 1.7 46.8 1.0 C6 D:5BU21 2.6 44.5 1.0 C4 D:5BU21 2.7 46.3 1.0 O4 D:5BU21 3.0 44.2 1.0 OP2 D:A20 3.1 37.4 1.0 OP2 D:5BU21 3.5 36.9 1.0 O5' D:A20 3.6 39.8 1.0 N7 D:A20 3.6 32.2 1.0 C8 D:A20 3.7 33.1 1.0 N3 D:5BU21 3.9 45.6 1.0 N1 D:5BU21 3.9 43.1 1.0 P D:A20 4.0 40.9 1.0 C5 D:A20 4.1 31.2 1.0 C3' D:A20 4.2 39.6 1.0 N9 D:A20 4.3 34.8 1.0 C2 D:5BU21 4.5 44.4 1.0 O5' D:5BU21 4.5 38.5 1.0 N2 D:G6 4.5 35.6 1.0 P D:5BU21 4.5 41.0 1.0 C4 D:A20 4.5 33.9 1.0 O2' D:G19 4.7 39.3 1.0 N7 D:G22 4.7 33.6 1.0 C5' D:A20 4.8 36.8 1.0 C2' D:A20 4.8 40.0 1.0 C6 D:A20 4.9 29.4 1.0 O3' D:A20 4.9 39.2 1.0 O3' D:G19 4.9 43.4 1.0 C4' D:A20 5.0 39.2 1.0

T.Moore, Y.Zhang, M.O.Fenley, H.Li. Molecular Basis of Box C/D Rna-Protein Interactions; Cocrystal Structure of Archaeal L7AE and A Box C/D Rna. Structure V. 12 807 2004.
ISSN: ISSN 0969-2126
PubMed: 15130473
DOI: 10.1016/J.STR.2004.02.033