Bromine in PDB 1roc: Crystal Structure of the Histone Deposition Protein ASF1
Protein crystallography data
The structure of Crystal Structure of the Histone Deposition Protein ASF1, PDB code: 1roc
was solved by
S.M.Daganzo,
J.P.Erzberger,
W.M.Lam,
E.Skordalakes,
R.Zhang,
A.A.Franco,
S.J.Brill,
P.D.Adams,
J.M.Berger,
P.D.Kaufman,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
1.50
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
94.395,
31.702,
53.625,
90.00,
124.55,
90.00
|
R / Rfree (%)
|
19.8 /
24.6
|
Bromine Binding Sites:
The binding sites of Bromine atom in the Crystal Structure of the Histone Deposition Protein ASF1
(pdb code 1roc). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 9 binding sites of Bromine where determined in the
Crystal Structure of the Histone Deposition Protein ASF1, PDB code: 1roc:
Jump to Bromine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Bromine binding site 1 out
of 9 in 1roc
Go back to
Bromine Binding Sites List in 1roc
Bromine binding site 1 out
of 9 in the Crystal Structure of the Histone Deposition Protein ASF1
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of Crystal Structure of the Histone Deposition Protein ASF1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:29.6
occ:1.00
|
O
|
A:HOH220
|
3.3
|
21.1
|
1.0
|
NH1
|
A:ARG145
|
3.4
|
21.7
|
1.0
|
CD2
|
A:LEU96
|
3.7
|
14.1
|
1.0
|
CG
|
A:ARG145
|
3.9
|
15.5
|
1.0
|
CB
|
A:ARG145
|
4.0
|
13.6
|
1.0
|
CD
|
A:ARG145
|
4.0
|
18.5
|
1.0
|
CA
|
A:GLY110
|
4.1
|
12.5
|
1.0
|
O
|
A:ARG145
|
4.4
|
12.1
|
1.0
|
N
|
A:GLY110
|
4.5
|
12.9
|
1.0
|
CZ
|
A:ARG145
|
4.5
|
20.3
|
1.0
|
CD
|
A:ARG108
|
4.6
|
25.5
|
1.0
|
NE
|
A:ARG145
|
4.7
|
19.8
|
1.0
|
O
|
A:HOH355
|
4.7
|
32.3
|
1.0
|
|
Bromine binding site 2 out
of 9 in 1roc
Go back to
Bromine Binding Sites List in 1roc
Bromine binding site 2 out
of 9 in the Crystal Structure of the Histone Deposition Protein ASF1
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of Crystal Structure of the Histone Deposition Protein ASF1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br202
b:30.7
occ:1.00
|
N
|
A:TYR117
|
3.4
|
15.2
|
1.0
|
O
|
A:HOH347
|
3.5
|
29.2
|
1.0
|
CG
|
A:ARG123
|
3.8
|
16.1
|
1.0
|
CA
|
A:GLU116
|
3.9
|
17.6
|
1.0
|
CA
|
A:ARG123
|
4.1
|
18.2
|
1.0
|
CD2
|
A:TYR117
|
4.1
|
19.4
|
1.0
|
C
|
A:GLU116
|
4.1
|
16.8
|
1.0
|
CB
|
A:TYR117
|
4.1
|
14.6
|
1.0
|
CB
|
A:ARG123
|
4.2
|
17.6
|
1.0
|
CG
|
A:GLU116
|
4.3
|
22.8
|
1.0
|
CA
|
A:TYR117
|
4.4
|
14.9
|
1.0
|
CB
|
A:GLU116
|
4.4
|
18.9
|
1.0
|
O
|
A:ASN115
|
4.4
|
18.6
|
1.0
|
CB
|
A:LEU89
|
4.4
|
23.9
|
1.0
|
O
|
A:LEU89
|
4.5
|
24.0
|
1.0
|
CG
|
A:TYR117
|
4.5
|
16.1
|
1.0
|
CD
|
A:ARG123
|
4.6
|
16.6
|
1.0
|
CD1
|
A:LEU89
|
4.6
|
28.8
|
1.0
|
O
|
A:ARG123
|
4.7
|
19.8
|
1.0
|
CG
|
A:LEU89
|
4.8
|
26.0
|
1.0
|
C
|
A:ARG123
|
4.9
|
19.2
|
1.0
|
O
|
A:HOH287
|
5.0
|
22.6
|
1.0
|
N
|
A:GLU116
|
5.0
|
17.5
|
1.0
|
C
|
A:LEU89
|
5.0
|
23.4
|
1.0
|
|
Bromine binding site 3 out
of 9 in 1roc
Go back to
Bromine Binding Sites List in 1roc
Bromine binding site 3 out
of 9 in the Crystal Structure of the Histone Deposition Protein ASF1
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 3 of Crystal Structure of the Histone Deposition Protein ASF1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br203
b:39.9
occ:1.00
|
N
|
A:GLU142
|
3.4
|
15.6
|
1.0
|
C
|
A:LEU140
|
3.5
|
14.1
|
1.0
|
CA
|
A:LEU140
|
3.6
|
14.5
|
1.0
|
CB
|
A:GLU142
|
3.6
|
17.1
|
1.0
|
O
|
A:HOH293
|
3.7
|
29.4
|
1.0
|
N
|
A:ALA141
|
3.7
|
14.2
|
1.0
|
O
|
A:HOH364
|
3.7
|
29.6
|
1.0
|
CB
|
A:LEU140
|
3.8
|
14.9
|
1.0
|
CG
|
A:GLU142
|
3.9
|
20.8
|
1.0
|
CA
|
A:GLU142
|
3.9
|
16.6
|
1.0
|
O
|
A:LEU140
|
4.0
|
13.5
|
1.0
|
CG
|
A:LEU140
|
4.3
|
18.5
|
1.0
|
N
|
A:LYS143
|
4.4
|
16.0
|
1.0
|
C
|
A:GLU142
|
4.4
|
16.3
|
1.0
|
CG
|
A:LYS143
|
4.4
|
20.8
|
1.0
|
C
|
A:ALA141
|
4.5
|
15.5
|
1.0
|
CA
|
A:ALA141
|
4.6
|
14.8
|
1.0
|
CD
|
A:GLU142
|
4.8
|
26.9
|
1.0
|
O
|
A:ILE139
|
4.9
|
14.7
|
1.0
|
N
|
A:LEU140
|
5.0
|
13.6
|
1.0
|
|
Bromine binding site 4 out
of 9 in 1roc
Go back to
Bromine Binding Sites List in 1roc
Bromine binding site 4 out
of 9 in the Crystal Structure of the Histone Deposition Protein ASF1
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 4 of Crystal Structure of the Histone Deposition Protein ASF1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br204
b:46.3
occ:1.00
|
O
|
A:HOH344
|
2.5
|
27.9
|
1.0
|
N
|
A:ILE151
|
3.3
|
18.0
|
1.0
|
NE1
|
A:TRP153
|
3.3
|
18.3
|
1.0
|
O
|
A:ILE151
|
3.3
|
17.7
|
1.0
|
CA
|
A:ASN150
|
3.7
|
18.0
|
1.0
|
CA
|
A:SER2
|
3.7
|
19.9
|
1.0
|
CB
|
A:SER2
|
3.7
|
19.4
|
1.0
|
OG
|
A:SER2
|
3.8
|
19.8
|
1.0
|
C
|
A:ASN150
|
4.0
|
18.4
|
1.0
|
BR
|
A:BR206
|
4.1
|
55.0
|
1.0
|
O
|
A:PHE149
|
4.2
|
14.7
|
1.0
|
C
|
A:ILE151
|
4.2
|
18.2
|
1.0
|
CG1
|
A:ILE151
|
4.2
|
17.8
|
1.0
|
CD1
|
A:TRP153
|
4.2
|
18.7
|
1.0
|
N
|
A:SER2
|
4.2
|
21.9
|
1.0
|
CA
|
A:ILE151
|
4.2
|
17.8
|
1.0
|
OD1
|
A:ASN150
|
4.2
|
26.5
|
1.0
|
CE2
|
A:TRP153
|
4.3
|
16.2
|
1.0
|
CB
|
A:ASN150
|
4.3
|
18.2
|
1.0
|
CZ2
|
A:TRP153
|
4.5
|
15.0
|
1.0
|
N
|
A:ASN150
|
4.7
|
16.5
|
1.0
|
CG
|
A:ASN150
|
4.8
|
21.4
|
1.0
|
CB
|
A:ILE151
|
4.8
|
17.3
|
1.0
|
C
|
A:PHE149
|
4.9
|
15.6
|
1.0
|
C
|
A:ALA1
|
5.0
|
25.3
|
1.0
|
C
|
A:SER2
|
5.0
|
18.7
|
1.0
|
|
Bromine binding site 5 out
of 9 in 1roc
Go back to
Bromine Binding Sites List in 1roc
Bromine binding site 5 out
of 9 in the Crystal Structure of the Histone Deposition Protein ASF1
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 5 of Crystal Structure of the Histone Deposition Protein ASF1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br205
b:57.4
occ:1.00
|
CG2
|
A:VAL69
|
4.3
|
14.6
|
1.0
|
CB
|
A:VAL69
|
4.9
|
13.7
|
1.0
|
CG1
|
A:VAL69
|
4.9
|
15.9
|
1.0
|
|
Bromine binding site 6 out
of 9 in 1roc
Go back to
Bromine Binding Sites List in 1roc
Bromine binding site 6 out
of 9 in the Crystal Structure of the Histone Deposition Protein ASF1
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 6 of Crystal Structure of the Histone Deposition Protein ASF1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br206
b:55.0
occ:1.00
|
OD1
|
A:ASN150
|
3.0
|
26.5
|
1.0
|
O
|
A:HOH238
|
3.4
|
26.7
|
1.0
|
O
|
A:HOH344
|
3.8
|
27.9
|
1.0
|
O
|
A:PHE149
|
3.8
|
14.7
|
1.0
|
CG
|
A:ASN150
|
3.9
|
21.4
|
1.0
|
C
|
A:PHE149
|
4.0
|
15.6
|
1.0
|
CB
|
A:ARG148
|
4.0
|
14.6
|
1.0
|
N
|
A:ASN150
|
4.1
|
16.5
|
1.0
|
O
|
A:HOH299
|
4.1
|
30.3
|
1.0
|
BR
|
A:BR204
|
4.1
|
46.3
|
1.0
|
CA
|
A:ASN150
|
4.1
|
18.0
|
1.0
|
CB
|
A:SER2
|
4.2
|
19.4
|
1.0
|
N
|
A:PHE149
|
4.6
|
14.3
|
1.0
|
CB
|
A:ASN150
|
4.6
|
18.2
|
1.0
|
OG
|
A:SER2
|
4.7
|
19.8
|
1.0
|
C
|
A:ARG148
|
4.7
|
14.0
|
1.0
|
ND2
|
A:ASN150
|
4.7
|
24.4
|
1.0
|
CA
|
A:PHE149
|
4.8
|
14.9
|
1.0
|
O
|
A:HOH241
|
4.8
|
25.3
|
1.0
|
CG
|
A:ARG148
|
4.8
|
15.1
|
1.0
|
CD
|
A:ARG148
|
4.9
|
16.1
|
1.0
|
CA
|
A:ARG148
|
5.0
|
14.0
|
1.0
|
|
Bromine binding site 7 out
of 9 in 1roc
Go back to
Bromine Binding Sites List in 1roc
Bromine binding site 7 out
of 9 in the Crystal Structure of the Histone Deposition Protein ASF1
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 7 of Crystal Structure of the Histone Deposition Protein ASF1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br207
b:53.9
occ:1.00
|
O
|
A:HOH330
|
3.2
|
24.4
|
1.0
|
CD
|
A:LYS10
|
3.9
|
24.6
|
1.0
|
NZ
|
A:LYS10
|
4.6
|
32.7
|
1.0
|
OE1
|
A:GLU25
|
4.6
|
26.7
|
1.0
|
O
|
A:HOH296
|
4.8
|
30.7
|
1.0
|
CE
|
A:LYS10
|
4.8
|
29.0
|
1.0
|
|
Bromine binding site 8 out
of 9 in 1roc
Go back to
Bromine Binding Sites List in 1roc
Bromine binding site 8 out
of 9 in the Crystal Structure of the Histone Deposition Protein ASF1
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 8 of Crystal Structure of the Histone Deposition Protein ASF1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br208
b:64.5
occ:1.00
|
CD
|
A:ARG104
|
3.4
|
15.1
|
1.0
|
N
|
A:VAL152
|
3.4
|
18.4
|
1.0
|
CA
|
A:ILE151
|
3.8
|
17.8
|
1.0
|
CB
|
A:ILE151
|
4.1
|
17.3
|
1.0
|
NE
|
A:ARG104
|
4.1
|
15.9
|
1.0
|
C
|
A:ILE151
|
4.1
|
18.2
|
1.0
|
CB
|
A:VAL152
|
4.3
|
19.0
|
1.0
|
CG2
|
A:ILE151
|
4.4
|
17.1
|
1.0
|
CA
|
A:VAL152
|
4.5
|
19.2
|
1.0
|
CG
|
A:ARG104
|
4.5
|
16.1
|
1.0
|
O
|
A:ASN150
|
4.5
|
19.5
|
1.0
|
CG2
|
A:VAL152
|
4.5
|
20.4
|
1.0
|
CB
|
A:ARG104
|
4.7
|
14.5
|
1.0
|
O
|
A:HOH328
|
4.8
|
31.3
|
1.0
|
O
|
A:VAL152
|
4.9
|
18.4
|
1.0
|
N
|
A:ILE151
|
5.0
|
18.0
|
1.0
|
|
Bromine binding site 9 out
of 9 in 1roc
Go back to
Bromine Binding Sites List in 1roc
Bromine binding site 9 out
of 9 in the Crystal Structure of the Histone Deposition Protein ASF1
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 9 of Crystal Structure of the Histone Deposition Protein ASF1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br209
b:0.9
occ:1.00
|
ND2
|
A:ASN13
|
3.9
|
27.0
|
1.0
|
O
|
A:HOH323
|
3.9
|
29.8
|
1.0
|
CD1
|
A:LEU12
|
4.3
|
19.9
|
1.0
|
CD2
|
A:LEU12
|
4.4
|
20.8
|
1.0
|
OD1
|
A:ASN13
|
4.5
|
29.0
|
1.0
|
CB
|
A:LEU12
|
4.5
|
15.3
|
1.0
|
CG
|
A:ASN13
|
4.5
|
23.8
|
1.0
|
OE1
|
A:GLU23
|
4.6
|
30.0
|
1.0
|
CG
|
A:LEU12
|
4.7
|
18.0
|
1.0
|
|
Reference:
S.M.Daganzo,
J.P.Erzberger,
W.M.Lam,
E.Skordalakes,
R.Zhang,
A.A.Franco,
S.J.Brill,
P.D.Adams,
J.M.Berger,
P.D.Kaufman.
Structure and Function of the Conserved Core of Histone Deposition Protein ASF1. Curr.Biol. V. 13 2148 2003.
ISSN: ISSN 0960-9822
PubMed: 14680630
DOI: 10.1016/J.CUB.2003.11.027
Page generated: Wed Jul 10 17:18:26 2024
|