Bromine in PDB 1wtp: Hyperthermophile Chromosomal Protein SAC7D Single Mutant M29F in Complex with Dna Gcga(Ubr)Cgc

The structure of Hyperthermophile Chromosomal Protein SAC7D Single Mutant M29F in Complex with Dna Gcga(Ubr)Cgc, PDB code: 1wtp was solved by C.-Y.Chen, T.-P.Ko, T.-W.Lin, C.-C.Chou, C.-J.Chen, A.H.-J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	38.217, 47.889, 52.494, 90.00, 102.67, 90.00
R / Rfree (%)	22.2 / 28.7

The binding sites of Bromine atom in the Hyperthermophile Chromosomal Protein SAC7D Single Mutant M29F in Complex with Dna Gcga(Ubr)Cgc (pdb code 1wtp). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 4 binding sites of Bromine where determined in the Hyperthermophile Chromosomal Protein SAC7D Single Mutant M29F in Complex with Dna Gcga(Ubr)Cgc, PDB code: 1wtp:
Jump to Bromine binding site number: 1; 2; 3; 4;

Bromine binding site 1 out of 4 in the Hyperthermophile Chromosomal Protein SAC7D Single Mutant M29F in Complex with Dna Gcga(Ubr)Cgc


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Hyperthermophile Chromosomal Protein SAC7D Single Mutant M29F in Complex with Dna Gcga(Ubr)Cgc within 5.0Å range: probe atom residue distance (Å) B Occ C:Br105 b:38.9 occ:1.00 BR C:BRU105 0.0 38.9 1.0 C5 C:BRU105 1.8 27.1 1.0 C6 C:BRU105 2.7 24.7 1.0 C4 C:BRU105 2.9 25.9 1.0 O4 C:BRU105 3.2 25.2 1.0 C8 C:DA104 3.7 24.2 1.0 O C:HOH287 3.8 29.0 1.0 N7 C:DA104 3.9 24.1 1.0 N9 C:DA104 3.9 24.6 1.0 C2' C:DA104 4.0 22.9 1.0 N1 C:BRU105 4.1 21.1 1.0 N3 C:BRU105 4.1 22.0 1.0 C5 C:DA104 4.3 23.7 1.0 C4 C:DA104 4.3 25.1 1.0 O D:HOH355 4.3 46.6 1.0 C1' C:DA104 4.5 24.6 1.0 N4 C:DC106 4.5 25.9 1.0 C2 C:BRU105 4.6 24.9 1.0

Bromine binding site 2 out of 4 in the Hyperthermophile Chromosomal Protein SAC7D Single Mutant M29F in Complex with Dna Gcga(Ubr)Cgc


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Hyperthermophile Chromosomal Protein SAC7D Single Mutant M29F in Complex with Dna Gcga(Ubr)Cgc within 5.0Å range: probe atom residue distance (Å) B Occ D:Br113 b:34.3 occ:1.00 BR D:BRU113 0.0 34.3 1.0 C5 D:BRU113 1.7 26.9 1.0 C6 D:BRU113 2.6 26.1 1.0 C4 D:BRU113 2.7 24.9 1.0 O4 D:BRU113 3.1 26.9 1.0 O D:HOH217 3.5 22.2 1.0 C8 D:DA112 3.6 27.2 1.0 N7 D:DA112 3.7 26.9 1.0 O D:HOH256 3.8 27.0 1.0 O D:HOH206 3.8 23.6 1.0 N4 D:DC114 3.8 20.6 1.0 N3 D:BRU113 4.0 23.3 1.0 N1 D:BRU113 4.0 22.3 1.0 N9 D:DA112 4.3 29.8 1.0 C5 D:DA112 4.4 25.4 1.0 C2 D:BRU113 4.5 22.3 1.0 C4 D:DC114 4.6 20.7 1.0 C2' D:DA112 4.6 33.8 1.0 C4 D:DA112 4.7 26.4 1.0 C5 D:DC114 4.8 20.0 1.0

Bromine binding site 3 out of 4 in the Hyperthermophile Chromosomal Protein SAC7D Single Mutant M29F in Complex with Dna Gcga(Ubr)Cgc


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Hyperthermophile Chromosomal Protein SAC7D Single Mutant M29F in Complex with Dna Gcga(Ubr)Cgc within 5.0Å range: probe atom residue distance (Å) B Occ E:Br105 b:49.7 occ:1.00 BR E:BRU105 0.0 49.7 1.0 C5 E:BRU105 1.7 37.4 1.0 C6 E:BRU105 2.6 34.6 1.0 C4 E:BRU105 2.7 35.8 1.0 O4 E:BRU105 3.0 33.3 1.0 C8 E:DA104 3.6 26.6 1.0 N7 E:DA104 3.8 27.6 1.0 N1 E:BRU105 3.9 31.2 1.0 N9 E:DA104 3.9 26.6 1.0 N3 E:BRU105 3.9 31.9 1.0 C2' E:DA104 4.1 30.9 1.0 O A:HOH301 4.2 33.5 1.0 O E:HOH330 4.3 37.4 1.0 C5 E:DA104 4.3 27.5 1.0 C4 E:DA104 4.4 26.8 1.0 C2 E:BRU105 4.5 30.9 1.0 C1' E:DA104 4.5 26.8 1.0 O E:HOH242 4.7 38.5 1.0 O6 F:DG111 4.9 31.3 1.0

Bromine binding site 4 out of 4 in the Hyperthermophile Chromosomal Protein SAC7D Single Mutant M29F in Complex with Dna Gcga(Ubr)Cgc


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Hyperthermophile Chromosomal Protein SAC7D Single Mutant M29F in Complex with Dna Gcga(Ubr)Cgc within 5.0Å range: probe atom residue distance (Å) B Occ F:Br113 b:42.2 occ:1.00 BR F:BRU113 0.0 42.2 1.0 C5 F:BRU113 1.7 33.3 1.0 C6 F:BRU113 2.6 32.4 1.0 C4 F:BRU113 2.7 30.2 1.0 O4 F:BRU113 3.0 27.1 1.0 C8 F:DA112 3.5 33.5 1.0 O F:HOH227 3.7 24.1 1.0 N4 F:DC114 3.7 23.4 1.0 N7 F:DA112 3.8 31.6 1.0 N9 F:DA112 3.9 34.2 1.0 N3 F:BRU113 3.9 28.5 1.0 N1 F:BRU113 3.9 31.5 1.0 C2' F:DA112 4.0 39.2 1.0 C4 F:DC114 4.3 25.8 1.0 C1' F:DA112 4.4 36.7 1.0 C5 F:DA112 4.4 31.4 1.0 C4 F:DA112 4.4 31.8 1.0 C2 F:BRU113 4.5 31.6 1.0 C5 F:DC114 4.6 26.9 1.0

C.-Y.Chen, T.-P.Ko, T.-W.Lin, C.-C.Chou, C.-J.Chen, A.H.-J.Wang. Probing the Dna Kink Structure Induced By the Hyperthermophilic Chromosomal Protein SAC7D Nucleic Acids Res. V. 33 430 2005.
ISSN: ISSN 0305-1048
PubMed: 15653643
DOI: 10.1093/NAR/GKI191