Bromine in the structure of Hiv-1 Dis Rna Subtype F- Mpd Form (pdb 1y3s)

The binding sites of Bromine atom in the structure of Hiv-1 Dis Rna Subtype F- Mpd Form (pdb code 1y3s). This binding sites where shown with 5.0 Angstroms radius around Bromine atom. The 1y3s structure was solved by E.ENNIFAR, P.DUMAS, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 10.0-2.2 Space group C2221 a (A) 27.243 b (A) 117.794 c (A) 94.587 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 24.3 Rfree (%) 26.2 Bromine Binding Sites: Bromine binding site 1 out of 2 in 1y3s Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Bromine in the PDB 1y3s. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Bromine atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U2, A: 5bu3, A: K24, A: Hoh40, conact list: Atom Atom Distance (A) Br N3 A:U2 3.83 Br C3' A:U2 4.14 Br C2 A:U2 3.88 Br C6 A:U2 3.47 Br N1 A:U2 3.69 Br C5 A:U2 3.47 Br C1' A:U2 4.50 Br O2 A:U2 4.59 Br O3' A:U2 4.97 Br C4 A:U2 3.69 Br OP2 A:U2 4.87 Br C2' A:U2 4.27 Br O5' A:U2 4.57 Br O4 A:U2 4.34 Br N3 A:5bu3 4.19 Br C2 A:5bu3 4.75 Br C6 A:5bu3 2.83 Br N1 A:5bu3 4.15 Br C5 A:5bu3 1.91 Br P A:5bu3 4.77 Br C4 A:5bu3 2.95 Br OP2 A:5bu3 3.94 Br BR A:5bu3 0.00 Br O5' A:5bu3 4.55 Br O4 A:5bu3 3.23 Br K A:K24 3.89 Br O A:Hoh40 3.78 interactive model: Bromine binding site 2 out of 2 in 1y3s Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Bromine in the PDB 1y3s. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Bromine atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: U2, B: 5bu3, B: K24, B: Hoh66, conact list: Atom Atom Distance (A) Br N3 B:U2 4.51 Br C3' B:U2 4.27 Br C2 B:U2 4.48 Br C6 B:U2 3.97 Br N1 B:U2 4.23 Br C5 B:U2 4.04 Br C1' B:U2 4.94 Br O3' B:U2 4.89 Br C4 B:U2 4.37 Br OP2 B:U2 4.94 Br C2' B:U2 4.58 Br O5' B:U2 4.68 Br N3 B:5bu3 4.17 Br C2 B:5bu3 4.73 Br C6 B:5bu3 2.84 Br N1 B:5bu3 4.14 Br C5 B:5bu3 1.92 Br P B:5bu3 4.41 Br C4 B:5bu3 2.93 Br OP2 B:5bu3 3.40 Br BR B:5bu3 0.00 Br O5' B:5bu3 4.26 Br O4 B:5bu3 3.20 Br K B:K24 3.70 Br O B:Hoh66 3.20 interactive model: