Bromine in PDB 1z7l: Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme

The structure of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme, PDB code: 1z7l was solved by R.H.Szczepanowski, R.Filipek, M.Bochtler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 2.80
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	216.123, 216.123, 196.092, 90.00, 90.00, 120.00
R / Rfree (%)	27.7 / 30.8

The structure of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme also contains other interesting chemical elements:

Tantalum

(Ta)

18 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 36;

Binding sites:

The binding sites of Bromine atom in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme (pdb code 1z7l). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 36 binding sites of Bromine where determined in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme, PDB code: 1z7l:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Bromine binding site 1 out of 36 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Br999 b:87.0 occ:0.15 BR1 A:TBR999 0.0 87.0 0.1 TA2 A:TBR999 2.6 86.7 0.1 TA1 A:TBR999 2.6 88.3 0.1 BR5 A:TBR999 3.6 86.4 0.1 BR2 A:TBR999 3.6 86.8 0.1 BRC A:TBR999 3.6 86.7 0.1 BR4 A:TBR999 3.6 87.0 0.1 TA3 A:TBR999 4.2 86.6 0.1 TA6 A:TBR999 4.2 86.0 0.1

Bromine binding site 2 out of 36 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Br999 b:86.8 occ:0.15 BR2 A:TBR999 0.0 86.8 0.1 TA1 A:TBR999 2.6 88.3 0.1 TA3 A:TBR999 2.6 86.6 0.1 BR3 A:TBR999 3.6 86.7 0.1 BR1 A:TBR999 3.6 87.0 0.1 BR6 A:TBR999 3.6 87.0 0.1 BR5 A:TBR999 3.6 86.4 0.1 TA5 A:TBR999 4.2 86.0 0.1 TA2 A:TBR999 4.2 86.7 0.1

Bromine binding site 3 out of 36 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Br999 b:86.7 occ:0.15 BR3 A:TBR999 0.0 86.7 0.1 TA1 A:TBR999 2.6 88.3 0.1 TA5 A:TBR999 2.6 86.0 0.1 OD2 A:ASP650 3.3 92.7 1.0 BR6 A:TBR999 3.6 87.0 0.1 BR4 A:TBR999 3.6 87.0 0.1 BRB A:TBR999 3.6 86.7 0.1 BR2 A:TBR999 3.6 86.8 0.1 CG A:ASP650 3.9 69.6 1.0 OD1 A:ASP650 3.9 88.1 1.0 NE2 A:GLN646 4.2 87.7 1.0 TA6 A:TBR999 4.2 86.0 0.1 TA3 A:TBR999 4.2 86.6 0.1 OE1 A:GLN646 4.9 93.7 1.0 CD1 A:LEU634 4.9 72.2 1.0 CD A:GLN646 5.0 83.9 1.0

Bromine binding site 4 out of 36 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Br999 b:87.0 occ:0.15 BR4 A:TBR999 0.0 87.0 0.1 TA6 A:TBR999 2.6 86.0 0.1 TA1 A:TBR999 2.6 88.3 0.1 BR3 A:TBR999 3.6 86.7 0.1 BRB A:TBR999 3.6 86.7 0.1 BRC A:TBR999 3.6 86.7 0.1 BR1 A:TBR999 3.6 87.0 0.1 TA5 A:TBR999 4.2 86.0 0.1 TA2 A:TBR999 4.2 86.7 0.1

Bromine binding site 5 out of 36 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Br999 b:86.4 occ:0.15 BR5 A:TBR999 0.0 86.4 0.1 TA2 A:TBR999 2.6 86.7 0.1 TA3 A:TBR999 2.6 86.6 0.1 BR1 A:TBR999 3.6 87.0 0.1 BR9 A:TBR999 3.6 86.7 0.1 BRA A:TBR999 3.6 86.1 0.1 BR2 A:TBR999 3.6 86.8 0.1 TA1 A:TBR999 4.2 88.3 0.1 TA4 A:TBR999 4.2 83.4 0.1 OE1 A:GLU653 4.6 69.1 1.0 CD A:GLU653 5.0 71.8 1.0

Bromine binding site 6 out of 36 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Br999 b:87.0 occ:0.15 BR6 A:TBR999 0.0 87.0 0.1 TA5 A:TBR999 2.6 86.0 0.1 TA3 A:TBR999 2.6 86.6 0.1 OD1 A:ASP650 2.8 88.1 1.0 CG A:ASP650 3.1 69.6 1.0 CA A:ASP650 3.3 58.1 1.0 BR3 A:TBR999 3.6 86.7 0.1 BRA A:TBR999 3.6 86.1 0.1 BR7 A:TBR999 3.6 86.0 0.1 BR2 A:TBR999 3.6 86.8 0.1 CB A:ASP650 3.7 60.8 1.0 N A:ASP650 3.7 59.1 1.0 OD2 A:ASP650 3.8 92.7 1.0 TA4 A:TBR999 4.1 83.4 0.1 TA1 A:TBR999 4.1 88.3 0.1 C A:ARG649 4.2 57.8 1.0 O A:ARG649 4.3 61.9 1.0 CG A:GLU653 4.5 64.1 1.0 CG A:ARG649 4.5 54.6 1.0 OE1 A:GLN646 4.5 93.7 1.0 C A:ASP650 4.5 54.6 1.0 O A:ASP650 4.8 55.9 1.0 CB A:GLU653 4.8 57.6 1.0 O A:GLN646 4.9 54.7 1.0 CB A:ARG649 5.0 50.2 1.0

Bromine binding site 7 out of 36 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Br999 b:86.0 occ:0.15 BR7 A:TBR999 0.0 86.0 0.1 TA5 A:TBR999 2.6 86.0 0.1 TA4 A:TBR999 2.6 83.4 0.1 OE1 A:GLN646 3.1 93.7 1.0 BRB A:TBR999 3.6 86.7 0.1 BR6 A:TBR999 3.6 87.0 0.1 BR8 A:TBR999 3.6 86.2 0.1 BRA A:TBR999 3.6 86.1 0.1 CG A:ARG649 3.8 54.6 1.0 TA6 A:TBR999 4.2 86.0 0.1 CD A:GLN646 4.2 83.9 1.0 TA3 A:TBR999 4.2 86.6 0.1 OD1 A:ASP650 4.4 88.1 1.0 CB A:ARG649 4.5 50.2 1.0 O A:LYS889 4.5 0.2 1.0 NE2 A:GLN646 4.7 87.7 1.0 CD A:ARG649 4.9 67.5 1.0

Bromine binding site 8 out of 36 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Br999 b:86.2 occ:0.15 BR8 A:TBR999 0.0 86.2 0.1 TA4 A:TBR999 2.6 83.4 0.1 TA6 A:TBR999 2.6 86.0 0.1 BR7 A:TBR999 3.6 86.0 0.1 BR9 A:TBR999 3.6 86.7 0.1 BRB A:TBR999 3.6 86.7 0.1 BRC A:TBR999 3.6 86.7 0.1 TA5 A:TBR999 4.2 86.0 0.1 TA2 A:TBR999 4.2 86.7 0.1

Bromine binding site 9 out of 36 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Br999 b:86.7 occ:0.15 BR9 A:TBR999 0.0 86.7 0.1 TA2 A:TBR999 2.6 86.7 0.1 TA4 A:TBR999 2.6 83.4 0.1 BRC A:TBR999 3.6 86.7 0.1 BRA A:TBR999 3.6 86.1 0.1 BR8 A:TBR999 3.6 86.2 0.1 BR5 A:TBR999 3.6 86.4 0.1 TA6 A:TBR999 4.2 86.0 0.1 TA3 A:TBR999 4.2 86.6 0.1

Bromine binding site 10 out of 36 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 10 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Br999 b:86.1 occ:0.15 BRA A:TBR999 0.0 86.1 0.1 TA3 A:TBR999 2.6 86.6 0.1 TA4 A:TBR999 2.6 83.4 0.1 NH2 A:ARG649 3.5 67.9 1.0 BR6 A:TBR999 3.6 87.0 0.1 BR9 A:TBR999 3.6 86.7 0.1 BR5 A:TBR999 3.6 86.4 0.1 BR7 A:TBR999 3.6 86.0 0.1 CZ A:ARG649 3.6 71.5 1.0 CG A:GLU653 3.7 64.1 1.0 NH1 A:ARG649 3.9 63.6 1.0 CD A:GLU653 4.1 71.8 1.0 TA5 A:TBR999 4.1 86.0 0.1 TA2 A:TBR999 4.2 86.7 0.1 NE A:ARG649 4.2 71.1 1.0 OE2 A:GLU653 4.3 69.6 1.0 CG A:ARG649 4.5 54.6 1.0 OE1 A:GLU653 4.7 69.1 1.0 CD A:ARG649 5.0 67.5 1.0

R.H.Szczepanowski, R.Filipek, M.Bochtler. Crystal Structure of A Fragment of Mouse Ubiquitin-Activating Enzyme. J.Biol.Chem. V. 280 22006 2005.
ISSN: ISSN 0021-9258
PubMed: 15774460
DOI: 10.1074/JBC.M502583200