Bromine in PDB 238d: Crystal Structure of the Dna Decamer D(Agg(Br)Catgcct): Comparison with D(Aggcatgcct) and Implications For Cobalt Hexammine Binding to Dna

The structure of Crystal Structure of the Dna Decamer D(Agg(Br)Catgcct): Comparison with D(Aggcatgcct) and Implications For Cobalt Hexammine Binding to Dna, PDB code: 238d was solved by C.M.Nunn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.00
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	33.200, 33.200, 77.100, 90.00, 90.00, 120.00
R / Rfree (%)	19.6 / n/a

The binding sites of Bromine atom in the Crystal Structure of the Dna Decamer D(Agg(Br)Catgcct): Comparison with D(Aggcatgcct) and Implications For Cobalt Hexammine Binding to Dna (pdb code 238d). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of the Dna Decamer D(Agg(Br)Catgcct): Comparison with D(Aggcatgcct) and Implications For Cobalt Hexammine Binding to Dna, PDB code: 238d:

Bromine binding site 1 out of 1 in the Crystal Structure of the Dna Decamer D(Agg(Br)Catgcct): Comparison with D(Aggcatgcct) and Implications For Cobalt Hexammine Binding to Dna


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the Dna Decamer D(Agg(Br)Catgcct): Comparison with D(Aggcatgcct) and Implications For Cobalt Hexammine Binding to Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Br4 b:30.4 occ:1.00 BR A:CBR4 0.0 30.4 1.0 C5 A:CBR4 1.8 23.3 1.0 C6 A:CBR4 2.8 23.7 1.0 C4 A:CBR4 2.9 23.2 1.0 N4 A:CBR4 3.0 21.1 1.0 O A:HOH57 3.3 53.0 1.0 O A:HOH66 3.6 58.9 1.0 OP2 A:CBR4 3.7 28.5 1.0 C8 A:DG3 3.7 22.9 1.0 N7 A:DG3 3.7 21.6 1.0 O A:HOH14 3.8 35.7 1.0 N9 A:DG3 4.0 21.1 1.0 O A:HOH47 4.0 59.3 1.0 C5 A:DG3 4.0 21.3 1.0 C3' A:DG3 4.0 23.6 1.0 N1 A:CBR4 4.0 23.1 1.0 C4 A:DG3 4.1 21.0 1.0 N3 A:CBR4 4.1 22.9 1.0 C2' A:DG3 4.3 22.0 1.0 O5' A:CBR4 4.3 26.4 1.0 P A:CBR4 4.5 27.4 1.0 C2 A:CBR4 4.5 23.4 1.0 C1' A:DG3 4.6 22.8 1.0 O A:HOH11 4.7 57.3 1.0 C6 A:DG3 4.7 22.2 1.0 O3' A:DG3 4.7 23.7 1.0 N3 A:DG3 4.9 20.9 1.0 O4' A:DG3 5.0 22.5 1.0 O5' A:DG3 5.0 32.5 1.0

C.M.Nunn, C.M.Nunn. N/A N/A.
ISSN: ISSN 0739-1102
PubMed: 8877561