Bromine in PDB 2az0: Flock House Virus B2-Dsrna Complex (P212121)

The structure of Flock House Virus B2-Dsrna Complex (P212121), PDB code: 2az0 was solved by J.A.Chao, J.H.Lee, B.R.Chapados, E.W.Debler, A.Schneemann, J.R.Williamson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.40 / 2.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.261, 86.232, 94.338, 90.00, 90.00, 90.00
R / Rfree (%)	24.1 / 26.9

The binding sites of Bromine atom in the Flock House Virus B2-Dsrna Complex (P212121) (pdb code 2az0). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 6 binding sites of Bromine where determined in the Flock House Virus B2-Dsrna Complex (P212121), PDB code: 2az0:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6;

Bromine binding site 1 out of 6 in the Flock House Virus B2-Dsrna Complex (P212121)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Flock House Virus B2-Dsrna Complex (P212121) within 5.0Å range: probe atom residue distance (Å) B Occ C:Br4 b:32.5 occ:0.28 BR C:5BU4 0.0 32.5 0.3 C5 C:5BU4 1.9 32.4 1.0 C6 C:5BU4 2.8 32.5 1.0 C4 C:5BU4 2.9 32.5 1.0 O4 C:5BU4 3.2 31.9 1.0 N7 C:A3 3.3 32.6 1.0 C8 C:A3 3.4 35.1 1.0 C5 C:A3 3.7 31.6 1.0 OP2 C:5BU4 3.8 43.0 1.0 N9 C:A3 3.9 35.7 1.0 C4 C:A3 4.1 32.5 1.0 N1 C:5BU4 4.1 33.6 1.0 N3 C:5BU4 4.1 31.1 1.0 C3' C:A3 4.3 43.2 1.0 C2' C:A3 4.5 41.6 1.0 O5' C:5BU4 4.5 45.2 1.0 C6 C:A3 4.5 31.4 1.0 P C:5BU4 4.7 45.7 1.0 C2 C:5BU4 4.7 32.7 1.0 C1' C:A3 4.8 38.8 1.0 N6 C:A3 4.8 31.1 1.0 O C:HOH19 5.0 39.2 1.0

Bromine binding site 2 out of 6 in the Flock House Virus B2-Dsrna Complex (P212121)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Flock House Virus B2-Dsrna Complex (P212121) within 5.0Å range: probe atom residue distance (Å) B Occ C:Br12 b:63.7 occ:0.32 BR C:5BU12 0.0 63.7 0.3 C5 C:5BU12 1.9 67.0 1.0 C6 C:5BU12 2.8 67.6 1.0 C4 C:5BU12 2.9 67.6 1.0 O4 C:5BU12 3.1 67.7 1.0 OP2 C:5BU12 3.6 75.4 1.0 N7 C:G11 3.7 71.2 1.0 C8 C:G11 3.8 71.5 1.0 C5 C:G11 3.8 70.5 1.0 N9 C:G11 3.9 71.6 1.0 C4 C:G11 3.9 70.5 1.0 N3 C:5BU12 4.1 67.9 1.0 N1 C:5BU12 4.1 69.0 1.0 C2' C:G11 4.1 73.8 1.0 C3' C:G11 4.2 74.2 1.0 O5' C:5BU12 4.3 72.8 1.0 C6 C:G11 4.4 70.0 1.0 P C:5BU12 4.5 75.5 1.0 N3 C:G11 4.5 69.9 1.0 C5 C:C13 4.6 57.5 1.0 C1' C:G11 4.6 72.7 1.0 N4 C:C13 4.6 57.7 1.0 C2 C:5BU12 4.7 68.4 1.0 N1 C:G11 4.9 69.3 1.0 O3' C:G11 4.9 75.6 1.0 O6 C:G11 5.0 70.5 1.0 C2 C:G11 5.0 69.8 1.0 C4 C:C13 5.0 57.6 1.0

Bromine binding site 3 out of 6 in the Flock House Virus B2-Dsrna Complex (P212121)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Flock House Virus B2-Dsrna Complex (P212121) within 5.0Å range: probe atom residue distance (Å) B Occ C:Br16 b:35.3 occ:0.25 BR C:5BU16 0.0 35.3 0.2 C5 C:5BU16 1.9 33.0 1.0 C6 C:5BU16 2.8 33.6 1.0 C4 C:5BU16 2.9 33.6 1.0 O4 C:5BU16 3.2 33.2 1.0 N7 C:A15 3.4 45.5 1.0 C8 C:A15 3.4 45.1 1.0 OP2 C:5BU16 3.8 39.9 1.0 C5 C:A15 3.8 44.3 1.0 N9 C:A15 3.9 44.1 1.0 N1 C:5BU16 4.1 34.1 1.0 C4 C:A15 4.1 44.0 1.0 N3 C:5BU16 4.1 32.5 1.0 C3' C:A15 4.3 43.7 1.0 C2' C:A15 4.4 43.8 1.0 O5' C:5BU16 4.5 41.2 1.0 C6 C:A15 4.6 43.1 1.0 C2 C:5BU16 4.7 34.1 1.0 P C:5BU16 4.7 41.3 1.0 C1' C:A15 4.7 43.7 1.0 O5' C:A15 4.8 48.7 1.0

Bromine binding site 4 out of 6 in the Flock House Virus B2-Dsrna Complex (P212121)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Flock House Virus B2-Dsrna Complex (P212121) within 5.0Å range: probe atom residue distance (Å) B Occ D:Br4 b:35.4 occ:0.31 BR D:5BU4 0.0 35.4 0.3 C5 D:5BU4 1.9 35.3 1.0 C6 D:5BU4 2.8 34.7 1.0 C4 D:5BU4 2.9 36.1 1.0 O4 D:5BU4 3.2 35.8 1.0 N7 D:A3 3.4 39.6 1.0 C8 D:A3 3.5 40.4 1.0 OP2 D:5BU4 3.5 38.1 1.0 C5 D:A3 3.7 39.5 1.0 N9 D:A3 3.9 40.6 1.0 C4 D:A3 4.0 39.9 1.0 N1 D:5BU4 4.1 34.6 1.0 N3 D:5BU4 4.1 34.9 1.0 C3' D:A3 4.2 39.6 1.0 O5' D:5BU4 4.2 37.7 1.0 C2' D:A3 4.2 39.0 1.0 P D:5BU4 4.4 38.1 1.0 C6 D:A3 4.5 38.5 1.0 C1' D:A3 4.7 39.4 1.0 C2 D:5BU4 4.7 34.9 1.0 O3' D:A3 4.8 38.4 1.0 N6 D:A3 4.9 37.7 1.0 N3 D:A3 4.9 39.1 1.0

Bromine binding site 5 out of 6 in the Flock House Virus B2-Dsrna Complex (P212121)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Flock House Virus B2-Dsrna Complex (P212121) within 5.0Å range: probe atom residue distance (Å) B Occ D:Br12 b:48.5 occ:0.22 BR D:5BU12 0.0 48.5 0.2 C5 D:5BU12 1.9 50.1 1.0 C6 D:5BU12 2.8 51.9 1.0 C4 D:5BU12 2.9 49.7 1.0 O4 D:5BU12 3.2 48.2 1.0 OP2 D:5BU12 3.4 63.9 1.0 N7 D:G11 3.5 62.9 1.0 C8 D:G11 3.5 63.8 1.0 C5 D:G11 3.6 62.9 1.0 N9 D:G11 3.7 63.7 1.0 C4 D:G11 3.7 62.9 1.0 C2' D:G11 4.0 63.9 1.0 C3' D:G11 4.0 64.8 1.0 N1 D:5BU12 4.1 52.8 1.0 N3 D:5BU12 4.1 51.0 1.0 O5' D:5BU12 4.2 62.5 1.0 C6 D:G11 4.3 62.4 1.0 P D:5BU12 4.3 64.4 1.0 C1' D:G11 4.4 63.8 1.0 N3 D:G11 4.5 62.3 1.0 C2 D:5BU12 4.7 51.8 1.0 O3' D:G11 4.7 64.6 1.0 O6 D:G11 4.9 62.8 1.0 N1 D:G11 4.9 61.2 1.0 C2 D:G11 5.0 61.4 1.0 O5' D:G11 5.0 73.8 1.0

Bromine binding site 6 out of 6 in the Flock House Virus B2-Dsrna Complex (P212121)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Flock House Virus B2-Dsrna Complex (P212121) within 5.0Å range: probe atom residue distance (Å) B Occ D:Br16 b:36.8 occ:0.26 BR D:5BU16 0.0 36.8 0.3 C5 D:5BU16 1.9 37.9 1.0 C6 D:5BU16 2.8 38.6 1.0 C4 D:5BU16 2.9 35.8 1.0 O4 D:5BU16 3.1 36.7 1.0 N7 D:A15 3.6 32.9 1.0 C8 D:A15 3.7 32.2 1.0 C5 D:A15 3.8 32.5 1.0 N9 D:A15 4.0 32.9 1.0 OP2 D:5BU16 4.1 39.3 1.0 N3 D:5BU16 4.1 35.7 1.0 C4 D:A15 4.1 33.1 1.0 N1 D:5BU16 4.1 36.9 1.0 C6 D:A15 4.5 32.1 1.0 C2' D:A15 4.5 37.1 1.0 C3' D:A15 4.6 38.7 1.0 C2 D:5BU16 4.7 38.0 1.0 O5' D:5BU16 4.8 40.5 1.0 C1' D:A15 4.9 35.0 1.0 N3 D:A15 4.9 32.5 1.0 N6 D:A15 4.9 32.1 1.0

J.A.Chao, J.H.Lee, B.R.Chapados, E.W.Debler, A.Schneemann, J.R.Williamson. Dual Modes of Rna-Silencing Suppression By Flock House Virus Protein B2. Nat.Struct.Mol.Biol. V. 12 952 2005.
ISSN: ISSN 1545-9993
PubMed: 16228003
DOI: 10.1038/NSMB1005