Bromine in PDB 2az2: Flock House Virus B2-Dsrna Complex (P4122)

The structure of Flock House Virus B2-Dsrna Complex (P4122), PDB code: 2az2 was solved by J.A.Chao, J.H.Lee, B.R.Chapados, E.W.Debler, A.Schneemann, J.R.Williamson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.60 / 2.60
Space group	P 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	69.625, 69.625, 154.633, 90.00, 90.00, 90.00
R / Rfree (%)	24.5 / 26.5

The binding sites of Bromine atom in the Flock House Virus B2-Dsrna Complex (P4122) (pdb code 2az2). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 6 binding sites of Bromine where determined in the Flock House Virus B2-Dsrna Complex (P4122), PDB code: 2az2:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6;

Bromine binding site 1 out of 6 in the Flock House Virus B2-Dsrna Complex (P4122)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Flock House Virus B2-Dsrna Complex (P4122) within 5.0Å range: probe atom residue distance (Å) B Occ C:Br4 b:28.6 occ:0.36 BR C:5BU4 0.0 28.6 0.4 C5 C:5BU4 1.9 21.8 1.0 C6 C:5BU4 2.8 22.4 1.0 C4 C:5BU4 2.9 24.1 1.0 O4 C:5BU4 3.1 23.6 1.0 C8 C:A3 3.5 26.5 1.0 N7 C:A3 3.6 24.5 1.0 OP2 C:5BU4 3.7 39.2 1.0 C5 C:A3 3.9 25.0 1.0 N9 C:A3 3.9 27.3 1.0 C4 C:A3 4.0 25.2 1.0 N3 C:5BU4 4.1 24.5 1.0 N1 C:5BU4 4.1 25.8 1.0 C3' C:A3 4.3 35.6 1.0 C2' C:A3 4.3 34.7 1.0 O5' C:5BU4 4.4 38.1 1.0 C6 C:A3 4.6 24.1 1.0 P C:5BU4 4.6 40.6 1.0 C1' C:A3 4.6 31.5 1.0 C2 C:5BU4 4.7 25.8 1.0 N3 C:A3 4.8 25.8 1.0 O5' C:A3 4.9 36.1 1.0 O3' C:A3 5.0 38.2 1.0

Bromine binding site 2 out of 6 in the Flock House Virus B2-Dsrna Complex (P4122)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Flock House Virus B2-Dsrna Complex (P4122) within 5.0Å range: probe atom residue distance (Å) B Occ C:Br12 b:35.4 occ:0.34 BR C:5BU12 0.0 35.4 0.3 C5 C:5BU12 1.9 37.3 1.0 C6 C:5BU12 2.8 40.7 1.0 C4 C:5BU12 2.9 39.1 1.0 O4 C:5BU12 3.1 41.8 1.0 N7 C:G11 3.4 42.2 1.0 C8 C:G11 3.5 42.8 1.0 C5 C:G11 3.5 41.0 1.0 N9 C:G11 3.6 44.3 1.0 C4 C:G11 3.7 41.8 1.0 OP2 C:5BU12 3.7 51.6 1.0 C2' C:G11 4.0 50.0 1.0 N1 C:5BU12 4.1 43.8 1.0 N3 C:5BU12 4.1 39.1 1.0 C3' C:G11 4.2 50.5 1.0 C6 C:G11 4.2 41.9 1.0 O5' C:5BU12 4.4 50.7 1.0 N3 C:G11 4.4 40.0 1.0 C1' C:G11 4.4 47.4 1.0 P C:5BU12 4.6 52.6 1.0 C5 C:C13 4.7 32.4 1.0 C2 C:5BU12 4.7 41.8 1.0 N4 C:C13 4.7 28.2 1.0 N1 C:G11 4.8 40.8 1.0 O6 C:G11 4.8 45.9 1.0 C2 C:G11 4.9 39.8 1.0 O3' C:G11 4.9 52.0 1.0

Bromine binding site 3 out of 6 in the Flock House Virus B2-Dsrna Complex (P4122)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Flock House Virus B2-Dsrna Complex (P4122) within 5.0Å range: probe atom residue distance (Å) B Occ C:Br16 b:28.4 occ:0.29 BR C:5BU16 0.0 28.4 0.3 C5 C:5BU16 1.9 24.9 1.0 C6 C:5BU16 2.8 26.9 1.0 C4 C:5BU16 2.9 25.9 1.0 O4 C:5BU16 3.2 27.3 1.0 C8 C:A15 3.5 33.1 1.0 N7 C:A15 3.6 29.9 1.0 OP2 C:5BU16 3.6 33.0 1.0 N9 C:A15 4.0 32.6 1.0 C5 C:A15 4.1 30.2 1.0 N3 C:5BU16 4.1 29.1 1.0 N1 C:5BU16 4.1 31.6 1.0 C3' C:A15 4.2 35.8 1.0 C4 C:A15 4.4 31.3 1.0 C2' C:A15 4.4 35.6 1.0 O5' C:5BU16 4.5 34.6 1.0 O5' C:A15 4.5 38.3 1.0 P C:5BU16 4.6 36.9 1.0 C2 C:5BU16 4.7 31.8 1.0 C1' C:A15 4.8 34.9 1.0 OP2 C:A15 4.8 37.5 1.0 O3' C:A15 4.9 34.3 1.0 C6 C:A15 4.9 29.7 1.0

Bromine binding site 4 out of 6 in the Flock House Virus B2-Dsrna Complex (P4122)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Flock House Virus B2-Dsrna Complex (P4122) within 5.0Å range: probe atom residue distance (Å) B Occ D:Br4 b:29.1 occ:0.43 BR D:5BU4 0.0 29.1 0.4 C5 D:5BU4 1.9 25.8 1.0 C6 D:5BU4 2.8 25.7 1.0 C4 D:5BU4 2.9 26.6 1.0 O4 D:5BU4 3.1 25.6 1.0 C8 D:A3 3.4 24.4 1.0 N7 D:A3 3.4 23.2 1.0 C5 D:A3 3.9 24.0 1.0 OP2 D:5BU4 3.9 26.1 1.0 N9 D:A3 3.9 24.7 1.0 N3 D:5BU4 4.1 26.2 1.0 N1 D:5BU4 4.1 26.4 1.0 C4 D:A3 4.2 23.5 1.0 C3' D:A3 4.2 25.0 1.0 O5' D:5BU4 4.4 24.9 1.0 C2' D:A3 4.4 27.3 1.0 O5' D:A3 4.5 26.7 1.0 OP2 D:A3 4.5 29.2 1.0 C6 D:A3 4.7 25.3 1.0 P D:5BU4 4.7 27.2 1.0 C2 D:5BU4 4.7 27.4 1.0 C1' D:A3 4.7 25.5 1.0 O3' D:A3 5.0 25.5 1.0

Bromine binding site 5 out of 6 in the Flock House Virus B2-Dsrna Complex (P4122)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Flock House Virus B2-Dsrna Complex (P4122) within 5.0Å range: probe atom residue distance (Å) B Occ D:Br12 b:34.6 occ:0.31 BR D:5BU12 0.0 34.6 0.3 C5 D:5BU12 1.9 36.8 1.0 C6 D:5BU12 2.8 38.8 1.0 C4 D:5BU12 2.9 37.5 1.0 O4 D:5BU12 3.2 36.0 1.0 N7 D:G11 3.5 37.0 1.0 C5 D:G11 3.6 37.7 1.0 C8 D:G11 3.6 40.3 1.0 OP2 D:5BU12 3.7 52.6 1.0 C4 D:G11 3.7 39.1 1.0 N9 D:G11 3.7 41.6 1.0 N1 D:5BU12 4.1 40.8 1.0 N3 D:5BU12 4.1 36.6 1.0 C2' D:G11 4.2 48.6 1.0 C6 D:G11 4.2 37.0 1.0 C3' D:G11 4.3 51.0 1.0 N3 D:G11 4.4 38.2 1.0 O5' D:5BU12 4.4 51.4 1.0 C1' D:G11 4.5 45.8 1.0 P D:5BU12 4.6 54.8 1.0 C2 D:5BU12 4.7 39.0 1.0 N1 D:G11 4.7 35.2 1.0 O6 D:G11 4.8 37.1 1.0 N4 D:C13 4.8 30.5 1.0 C2 D:G11 4.8 36.8 1.0 O3' D:G11 5.0 53.2 1.0

Bromine binding site 6 out of 6 in the Flock House Virus B2-Dsrna Complex (P4122)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Flock House Virus B2-Dsrna Complex (P4122) within 5.0Å range: probe atom residue distance (Å) B Occ D:Br16 b:34.2 occ:0.30 BR D:5BU16 0.0 34.2 0.3 C5 D:5BU16 1.9 30.6 1.0 C6 D:5BU16 2.8 32.1 1.0 C4 D:5BU16 2.9 32.0 1.0 O4 D:5BU16 3.1 33.4 1.0 OP2 D:5BU16 3.6 32.5 1.0 N7 D:A15 3.7 27.7 1.0 C8 D:A15 3.7 28.1 1.0 C5 D:A15 4.1 27.4 1.0 N9 D:A15 4.1 30.8 1.0 N3 D:5BU16 4.1 28.4 1.0 N1 D:5BU16 4.1 33.1 1.0 C4 D:A15 4.3 27.6 1.0 C3' D:A15 4.4 31.7 1.0 C2' D:A15 4.4 33.5 1.0 O5' D:5BU16 4.5 30.4 1.0 P D:5BU16 4.6 34.3 1.0 C2 D:5BU16 4.7 31.7 1.0 C6 D:A15 4.8 29.4 1.0 C1' D:A15 4.9 32.7 1.0

J.A.Chao, J.H.Lee, B.R.Chapados, E.W.Debler, A.Schneemann, J.R.Williamson. Dual Modes of Rna-Silencing Suppression By Flock House Virus Protein B2. Nat.Struct.Mol.Biol. V. 12 952 2005.
ISSN: ISSN 1545-9993
PubMed: 16228003
DOI: 10.1038/NSMB1005