Atomistry » Bromine » PDB 1z76-2cej » 2byd
Atomistry »
  Bromine »
    PDB 1z76-2cej »
      2byd »

Bromine in PDB 2byd: Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase

Enzymatic activity of Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase

All present enzymatic activity of Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase:
1.2.1.31;

Protein crystallography data

The structure of Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase, PDB code: 2byd was solved by G.Bunkoczi, X.Wu, E.Dubinina, C.Johansson, C.Smee, A.Turnbull, U.Oppermann, F.Von Delft, C.Arrowsmith, A.Edwards, M.Sundstrom, J.Weigelt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.94 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 63.780, 69.948, 71.239, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 24.2

Bromine Binding Sites:

The binding sites of Bromine atom in the Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase (pdb code 2byd). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 9 binding sites of Bromine where determined in the Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase, PDB code: 2byd:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Bromine binding site 1 out of 9 in 2byd

Go back to Bromine Binding Sites List in 2byd
Bromine binding site 1 out of 9 in the Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1319

b:20.6
occ:1.00
 NH2 A:ARG74 3.3 11.6 1.0
N A:GLN51 3.4 14.9 1.0
NH1 A:ARG78 3.4 12.9 1.0
NE A:ARG74 3.4 8.8 1.0
CB A:ILE50 3.7 9.7 1.0
CG A:GLN51 3.8 8.6 1.0
CG A:GLU54 3.8 19.2 1.0
CD A:ARG78 3.8 18.3 1.0
CZ A:ARG74 3.8 6.3 1.0
CB A:GLN51 3.9 17.4 1.0
CA A:ILE50 4.0 13.9 1.0
CB A:GLU54 4.0 12.4 1.0
CD A:GLN51 4.1 11.6 1.0
CD1 A:LEU94 4.1 22.9 1.0
C A:ILE50 4.2 11.0 1.0
CA A:GLN51 4.3 11.9 1.0
CZ A:ARG78 4.3 12.9 1.0
CG A:ARG78 4.3 13.5 1.0
OE1 A:GLN51 4.4 19.0 1.0
CG2 A:ILE50 4.4 8.9 1.0
CB A:ARG74 4.4 8.2 1.0
NE A:ARG78 4.4 11.9 1.0
NE2 A:GLN51 4.6 12.4 1.0
CD A:ARG74 4.6 10.3 1.0
CG A:ARG74 4.6 14.2 1.0
CG1 A:ILE50 4.9 12.9 1.0
O A:ARG74 5.0 8.7 1.0

Bromine binding site 2 out of 9 in 2byd

Go back to Bromine Binding Sites List in 2byd
Bromine binding site 2 out of 9 in the Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1320

b:23.6
occ:0.90
 O A:HOH2048 3.2 20.2 1.0
N A:THR308 3.4 14.5 1.0
N A:ARG65 3.4 14.1 1.0
CB A:ARG65 3.6 18.8 1.0
CA A:PHE307 3.7 17.0 1.0
CG A:ARG65 3.8 15.1 1.0
OG1 A:THR308 3.8 25.7 1.0
CG2 A:THR308 3.9 19.4 1.0
CA A:ARG65 4.0 18.6 1.0
C A:PHE307 4.0 17.6 1.0
N A:ALA64 4.0 8.0 1.0
CB A:ALA64 4.1 11.4 1.0
O A:CYS306 4.1 12.9 1.0
CD A:ARG65 4.2 18.6 1.0
CB A:THR308 4.2 11.3 1.0
C A:ALA64 4.3 14.7 1.0
CA A:ALA64 4.4 12.5 1.0
CA A:THR308 4.4 16.7 1.0
CD1 A:PHE307 4.5 15.2 1.0
CB A:PHE307 4.5 18.0 1.0
CB A:PHE63 4.5 11.6 1.0
CD1 A:PHE63 4.5 10.2 1.0
N A:PHE307 4.7 15.2 1.0
C A:CYS306 4.8 13.5 1.0
C A:PHE63 4.8 12.8 1.0
OE1 A:GLU309 4.9 38.0 1.0
CG A:PHE307 4.9 15.1 1.0
NE A:ARG65 4.9 38.4 1.0
CG A:PHE63 5.0 15.7 1.0

Bromine binding site 3 out of 9 in 2byd

Go back to Bromine Binding Sites List in 2byd
Bromine binding site 3 out of 9 in the Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1321

b:26.3
occ:0.80
 NZ A:LYS84 3.3 19.9 1.0
NE1 A:TRP29 3.5 8.7 1.0
O A:HOH2006 3.6 18.8 1.0
O A:HOH2005 3.6 22.5 1.0
CE A:LYS84 3.8 17.6 1.0
CE2 A:TRP29 4.2 14.2 1.0
CZ2 A:TRP29 4.2 17.0 1.0
CD1 A:TRP29 4.6 8.7 1.0
CG2 A:VAL27 4.7 25.5 1.0
CG1 A:VAL27 4.8 23.2 1.0

Bromine binding site 4 out of 9 in 2byd

Go back to Bromine Binding Sites List in 2byd
Bromine binding site 4 out of 9 in the Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1322

b:28.9
occ:0.40
 N A:GLN276 3.2 58.5 1.0
N A:GLN278 3.6 23.4 1.0
C A:GLN276 3.8 55.3 1.0
CB A:GLN278 3.9 25.6 1.0
N A:ARG277 3.9 45.2 1.0
CA A:GLN276 4.0 57.9 1.0
O A:GLN276 4.2 56.9 1.0
CA A:GLN278 4.3 23.6 1.0
O A:GLN278 4.5 15.4 1.0
O A:HOH2162 4.5 28.8 1.0
CG A:GLN278 4.6 24.8 1.0
C A:ARG277 4.6 29.5 1.0
CA A:ARG277 4.8 41.3 1.0
CB A:GLN276 4.9 59.7 1.0
C A:GLN278 4.9 15.4 1.0

Bromine binding site 5 out of 9 in 2byd

Go back to Bromine Binding Sites List in 2byd
Bromine binding site 5 out of 9 in the Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1323

b:26.6
occ:0.30
 NH2 A:ARG48 3.5 22.1 1.0
C A:THR295 3.5 15.8 1.0
O A:THR295 3.6 13.4 1.0
N A:PRO296 3.6 19.9 1.0
CA A:PRO296 4.0 20.2 1.0
N A:THR295 4.1 19.6 1.0
CA A:THR295 4.1 18.1 1.0
CD A:PRO296 4.2 17.6 1.0
C A:MET294 4.2 18.7 1.0
O A:MET294 4.4 19.1 1.0
CG A:PRO296 4.4 21.6 1.0
CZ A:ARG48 4.4 25.6 1.0
CB A:PRO293 4.5 14.2 1.0
NE A:ARG48 4.5 22.6 1.0
O A:PRO293 4.7 16.4 1.0
C A:PRO293 4.7 16.7 1.0
N A:MET294 4.8 20.5 1.0
CB A:PRO296 4.8 22.0 1.0
CA A:MET294 4.8 22.2 1.0
CG A:PRO293 5.0 18.0 1.0

Bromine binding site 6 out of 9 in 2byd

Go back to Bromine Binding Sites List in 2byd
Bromine binding site 6 out of 9 in the Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1324

b:20.5
occ:0.30
 OG A:SER120 2.9 12.3 1.0
O A:HOH2081 3.2 36.9 1.0
N A:HIS121 3.6 8.4 1.0
CA A:SER120 3.6 8.7 1.0
CB A:SER120 3.7 16.4 1.0
O A:HIS121 3.8 13.1 1.0
OD1 A:ASP139 4.0 15.7 1.0
C A:SER120 4.1 5.8 1.0
NZ A:LYS195 4.1 23.3 1.0
O A:HOH2090 4.2 20.2 1.0
CD2 A:HIS121 4.2 32.1 1.0
CE A:LYS195 4.3 21.0 1.0
NE2 A:HIS121 4.6 39.4 1.0
O A:ILE119 4.6 11.8 1.0
C A:HIS121 4.7 14.6 1.0
CA A:HIS121 4.7 16.0 1.0
CG A:HIS121 4.8 16.2 1.0
N A:SER120 4.8 12.6 1.0

Bromine binding site 7 out of 9 in 2byd

Go back to Bromine Binding Sites List in 2byd
Bromine binding site 7 out of 9 in the Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1325

b:12.5
occ:0.30
 ND2 A:ASN118 3.2 29.2 1.0
CE A:LYS195 3.5 21.0 1.0
CB A:LYS195 3.9 14.5 1.0
CG A:LYS195 4.0 8.2 1.0
CG A:ASN118 4.1 8.6 1.0
CD A:LYS101 4.1 30.4 1.0
NZ A:LYS195 4.1 23.3 1.0
OD1 A:ASN118 4.2 18.8 1.0
CG A:LYS101 4.3 23.1 1.0
CD A:LYS195 4.4 19.6 1.0
CA A:LYS195 4.5 19.5 1.0
O A:LYS195 4.5 15.1 1.0
BR A:BR1327 4.6 12.4 0.2
CB A:LYS101 4.8 27.0 1.0
O A:ILE119 4.8 11.8 1.0
C A:LYS195 4.9 15.0 1.0
O A:HOH2025 4.9 28.1 1.0

Bromine binding site 8 out of 9 in 2byd

Go back to Bromine Binding Sites List in 2byd
Bromine binding site 8 out of 9 in the Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1326

b:2.0
occ:0.20
 O A:HOH2011 3.2 20.5 1.0
N A:PHE284 3.2 14.3 1.0
CB A:ASN283 3.6 18.6 1.0
CA A:ASN283 3.8 13.9 1.0
CD1 A:TRP36 3.8 16.4 1.0
CB A:PHE284 3.9 15.1 1.0
CE1 A:PHE31 4.0 15.0 1.0
C A:ASN283 4.0 10.9 1.0
O A:HOH2013 4.1 21.3 1.0
O A:HOH2012 4.1 22.5 1.0
CA A:PHE284 4.2 14.2 1.0
CZ A:PHE31 4.3 8.0 1.0
CG A:TRP36 4.4 14.2 1.0
NE1 A:TRP36 4.5 12.7 1.0
O A:HOH2165 4.5 9.9 1.0
CB A:TRP36 4.7 9.2 1.0
CG A:ASN283 4.8 20.4 1.0
CA A:TRP36 4.9 11.0 1.0

Bromine binding site 9 out of 9 in 2byd

Go back to Bromine Binding Sites List in 2byd
Bromine binding site 9 out of 9 in the Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1327

b:12.4
occ:0.20
 ND2 A:ASN118 3.2 29.2 1.0
CD A:PRO102 3.4 26.7 1.0
N A:ILE119 3.5 9.9 1.0
CA A:ASN118 3.6 9.8 1.0
CG1 A:ILE119 3.8 23.4 1.0
CG A:PRO102 3.8 27.1 1.0
CE1 A:PHE117 3.8 16.9 1.0
O A:PRO102 3.9 20.9 1.0
C A:ASN118 3.9 6.6 1.0
O A:HOH2025 4.0 28.1 1.0
CD1 A:PHE117 4.0 11.0 1.0
O A:PHE117 4.1 13.1 1.0
CB A:PRO102 4.1 24.6 1.0
CG A:LYS101 4.1 23.1 1.0
N A:PRO102 4.2 26.0 1.0
CG A:ASN118 4.3 8.6 1.0
N A:ASN118 4.5 10.1 1.0
CA A:ILE119 4.5 14.6 1.0
CB A:ASN118 4.5 10.0 1.0
CB A:ILE119 4.5 14.0 1.0
C A:PHE117 4.6 10.6 1.0
CD1 A:ILE119 4.6 17.6 1.0
CA A:PRO102 4.6 23.6 1.0
BR A:BR1325 4.6 12.5 0.3
CG2 A:ILE119 4.7 17.7 1.0
C A:PRO102 4.7 21.1 1.0
O A:ILE119 4.8 11.8 1.0
CD A:LYS101 4.8 30.4 1.0
CZ A:PHE117 4.9 12.9 1.0

Reference:

G.Bunkoczi, S.Pasta, A.Joshi, X.Wu, K.L.Kavanagh, S.Smith, U.Oppermann. Mechanism and Substrate Recognition of Human Holo Acp Synthase. Chem. Biol. V. 14 1243 2007.
ISSN: ISSN 1074-5521
PubMed: 18022563
DOI: 10.1016/J.CHEMBIOL.2007.10.013
Page generated: Mon Jul 7 04:08:56 2025

Last articles

Ca in 3AAJ
Ca in 3AAS
Ca in 3AAG
Ca in 3A8R
Ca in 3A9G
Ca in 3A9H
Ca in 3A8D
Ca in 3A70
Ca in 3A8C
Ca in 3A8B
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy