Bromine in PDB 2g2p: Crystal Structure of E.Coli Transthyretin-Related Protein with Bound Zn and Br
Protein crystallography data
The structure of Crystal Structure of E.Coli Transthyretin-Related Protein with Bound Zn and Br, PDB code: 2g2p
was solved by
E.Lundberg,
S.Backstrom,
U.H.Sauer,
A.E.Sauer-Eriksson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
17.38 /
2.10
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
44.720,
92.030,
57.490,
90.00,
103.50,
90.00
|
R / Rfree (%)
|
17.5 /
22.9
|
Other elements in 2g2p:
The structure of Crystal Structure of E.Coli Transthyretin-Related Protein with Bound Zn and Br also contains other interesting chemical elements:
Bromine Binding Sites:
The binding sites of Bromine atom in the Crystal Structure of E.Coli Transthyretin-Related Protein with Bound Zn and Br
(pdb code 2g2p). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 4 binding sites of Bromine where determined in the
Crystal Structure of E.Coli Transthyretin-Related Protein with Bound Zn and Br, PDB code: 2g2p:
Jump to Bromine binding site number:
1;
2;
3;
4;
Bromine binding site 1 out
of 4 in 2g2p
Go back to
Bromine Binding Sites List in 2g2p
Bromine binding site 1 out
of 4 in the Crystal Structure of E.Coli Transthyretin-Related Protein with Bound Zn and Br
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of Crystal Structure of E.Coli Transthyretin-Related Protein with Bound Zn and Br within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br1021
b:52.4
occ:0.95
|
ZN
|
A:ZN1001
|
2.6
|
48.3
|
0.8
|
O
|
A:VAL8
|
3.3
|
19.7
|
1.0
|
NE2
|
A:HIS98
|
3.5
|
29.0
|
1.0
|
CG
|
A:ARG47
|
3.6
|
19.0
|
1.0
|
CE1
|
A:HIS98
|
3.6
|
30.6
|
1.0
|
CB
|
A:SER7
|
3.8
|
18.5
|
1.0
|
C
|
A:VAL8
|
3.8
|
20.1
|
1.0
|
CB
|
A:HIS9
|
3.8
|
21.0
|
1.0
|
CB
|
A:ARG47
|
3.9
|
17.4
|
1.0
|
CD
|
A:ARG47
|
3.9
|
21.1
|
1.0
|
ND1
|
A:HIS9
|
4.0
|
24.8
|
1.0
|
N
|
A:VAL8
|
4.1
|
19.8
|
1.0
|
O
|
A:HOH1109
|
4.2
|
39.6
|
1.0
|
N
|
A:HIS9
|
4.3
|
20.9
|
1.0
|
O
|
A:ILE48
|
4.3
|
17.9
|
1.0
|
CG
|
A:HIS9
|
4.4
|
22.9
|
1.0
|
O
|
A:HOH1141
|
4.4
|
46.2
|
1.0
|
C
|
A:SER7
|
4.5
|
19.5
|
1.0
|
CA
|
A:VAL8
|
4.5
|
20.0
|
1.0
|
CA
|
A:ARG47
|
4.5
|
17.3
|
1.0
|
CD2
|
A:HIS98
|
4.5
|
27.7
|
1.0
|
OG
|
A:SER7
|
4.6
|
18.8
|
1.0
|
CA
|
A:HIS9
|
4.6
|
20.7
|
1.0
|
CA
|
A:SER7
|
4.6
|
18.8
|
1.0
|
N
|
A:ILE48
|
4.6
|
17.5
|
1.0
|
NE
|
A:ARG47
|
4.6
|
23.5
|
1.0
|
ND1
|
A:HIS98
|
4.6
|
31.5
|
1.0
|
C
|
A:ILE48
|
4.7
|
18.4
|
1.0
|
CA
|
A:LYS49
|
4.7
|
19.7
|
1.0
|
N
|
A:LYS49
|
4.9
|
18.9
|
1.0
|
|
Bromine binding site 2 out
of 4 in 2g2p
Go back to
Bromine Binding Sites List in 2g2p
Bromine binding site 2 out
of 4 in the Crystal Structure of E.Coli Transthyretin-Related Protein with Bound Zn and Br
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of Crystal Structure of E.Coli Transthyretin-Related Protein with Bound Zn and Br within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br1022
b:49.5
occ:0.85
|
ZN
|
B:ZN1002
|
2.5
|
47.9
|
0.8
|
O
|
B:VAL8
|
3.2
|
20.1
|
1.0
|
NE2
|
B:HIS98
|
3.4
|
26.0
|
1.0
|
NE
|
B:ARG47
|
3.5
|
26.5
|
1.0
|
CE1
|
B:HIS98
|
3.7
|
28.8
|
1.0
|
C
|
B:VAL8
|
3.7
|
20.1
|
1.0
|
CG
|
B:ARG47
|
3.8
|
18.8
|
1.0
|
CB
|
B:SER7
|
3.8
|
19.3
|
1.0
|
CB
|
B:ARG47
|
3.8
|
17.2
|
1.0
|
O
|
B:HOH1115
|
3.8
|
41.6
|
1.0
|
CB
|
B:HIS9
|
3.9
|
21.2
|
1.0
|
ND1
|
B:HIS9
|
4.1
|
26.4
|
1.0
|
N
|
B:VAL8
|
4.1
|
20.0
|
1.0
|
CD
|
B:ARG47
|
4.2
|
23.0
|
1.0
|
NH2
|
B:ARG47
|
4.3
|
31.7
|
1.0
|
O
|
B:ILE48
|
4.3
|
15.2
|
1.0
|
N
|
B:HIS9
|
4.3
|
19.8
|
1.0
|
CZ
|
B:ARG47
|
4.4
|
30.4
|
1.0
|
CG
|
B:HIS9
|
4.4
|
23.6
|
1.0
|
CD2
|
B:HIS98
|
4.4
|
26.1
|
1.0
|
O
|
B:HOH1141
|
4.4
|
50.3
|
1.0
|
CA
|
B:VAL8
|
4.4
|
20.1
|
1.0
|
CA
|
B:ARG47
|
4.5
|
17.1
|
1.0
|
C
|
B:SER7
|
4.5
|
19.6
|
1.0
|
N
|
B:ILE48
|
4.6
|
16.9
|
1.0
|
CA
|
B:HIS9
|
4.6
|
20.2
|
1.0
|
C
|
B:ILE48
|
4.6
|
16.7
|
1.0
|
CA
|
B:LYS49
|
4.6
|
18.2
|
1.0
|
CA
|
B:SER7
|
4.7
|
19.1
|
1.0
|
OG
|
B:SER7
|
4.7
|
18.0
|
1.0
|
ND1
|
B:HIS98
|
4.8
|
29.3
|
1.0
|
N
|
B:LYS49
|
4.8
|
17.3
|
1.0
|
CG
|
B:LYS49
|
5.0
|
20.9
|
1.0
|
|
Bromine binding site 3 out
of 4 in 2g2p
Go back to
Bromine Binding Sites List in 2g2p
Bromine binding site 3 out
of 4 in the Crystal Structure of E.Coli Transthyretin-Related Protein with Bound Zn and Br
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 3 of Crystal Structure of E.Coli Transthyretin-Related Protein with Bound Zn and Br within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Br1023
b:51.5
occ:0.65
|
ZN
|
C:ZN1003
|
2.5
|
49.3
|
0.6
|
O
|
C:VAL8
|
3.0
|
20.0
|
1.0
|
O
|
C:HOH1109
|
3.4
|
39.4
|
1.0
|
CG
|
C:ARG47
|
3.5
|
23.1
|
1.0
|
CB
|
C:ARG47
|
3.5
|
21.5
|
1.0
|
NE2
|
C:HIS98
|
3.6
|
19.2
|
1.0
|
C
|
C:VAL8
|
3.7
|
20.2
|
1.0
|
CD
|
C:ARG47
|
3.7
|
24.0
|
1.0
|
CB
|
C:HIS9
|
3.8
|
21.0
|
1.0
|
O
|
C:ILE48
|
3.9
|
20.1
|
1.0
|
CB
|
C:SER7
|
4.0
|
19.1
|
1.0
|
CG
|
C:LYS49
|
4.0
|
21.9
|
1.0
|
C
|
C:ILE48
|
4.0
|
20.1
|
1.0
|
N
|
C:ILE48
|
4.0
|
20.5
|
1.0
|
CA
|
C:ARG47
|
4.0
|
21.2
|
1.0
|
CA
|
C:LYS49
|
4.1
|
21.7
|
1.0
|
N
|
C:LYS49
|
4.1
|
21.2
|
1.0
|
N
|
C:VAL8
|
4.1
|
19.1
|
1.0
|
CE1
|
C:HIS98
|
4.2
|
20.8
|
1.0
|
N
|
C:HIS9
|
4.2
|
21.1
|
1.0
|
ND1
|
C:HIS9
|
4.2
|
23.2
|
1.0
|
C
|
C:ARG47
|
4.4
|
20.6
|
1.0
|
CG
|
C:HIS9
|
4.5
|
22.6
|
1.0
|
CA
|
C:HIS9
|
4.5
|
21.1
|
1.0
|
CA
|
C:VAL8
|
4.5
|
20.1
|
1.0
|
CD2
|
C:HIS98
|
4.5
|
21.1
|
1.0
|
NE
|
C:ARG47
|
4.6
|
26.5
|
1.0
|
CB
|
C:LYS49
|
4.6
|
22.0
|
1.0
|
C
|
C:SER7
|
4.6
|
18.9
|
1.0
|
CA
|
C:ILE48
|
4.7
|
20.4
|
1.0
|
CA
|
C:SER7
|
4.8
|
18.8
|
1.0
|
OG
|
C:SER7
|
4.9
|
18.7
|
1.0
|
|
Bromine binding site 4 out
of 4 in 2g2p
Go back to
Bromine Binding Sites List in 2g2p
Bromine binding site 4 out
of 4 in the Crystal Structure of E.Coli Transthyretin-Related Protein with Bound Zn and Br
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 4 of Crystal Structure of E.Coli Transthyretin-Related Protein with Bound Zn and Br within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Br1024
b:45.8
occ:1.00
|
ZN
|
D:ZN1004
|
2.4
|
46.2
|
1.0
|
O
|
D:VAL8
|
3.3
|
18.1
|
1.0
|
NE2
|
D:HIS98
|
3.3
|
24.7
|
1.0
|
CE1
|
D:HIS98
|
3.6
|
26.5
|
1.0
|
CG
|
D:ARG47
|
3.7
|
21.5
|
1.0
|
C
|
D:VAL8
|
3.8
|
19.6
|
1.0
|
CB
|
D:SER7
|
3.8
|
18.7
|
1.0
|
ND1
|
D:HIS9
|
3.8
|
25.6
|
1.0
|
CB
|
D:HIS9
|
3.8
|
21.3
|
1.0
|
CB
|
D:ARG47
|
4.0
|
19.4
|
1.0
|
CD
|
D:ARG47
|
4.0
|
24.2
|
1.0
|
N
|
D:VAL8
|
4.1
|
19.1
|
1.0
|
N
|
D:HIS9
|
4.3
|
19.6
|
1.0
|
O
|
D:ILE48
|
4.3
|
17.3
|
1.0
|
CG
|
D:HIS9
|
4.3
|
22.5
|
1.0
|
O
|
D:HOH1110
|
4.4
|
37.6
|
1.0
|
CA
|
D:LYS49
|
4.4
|
19.7
|
1.0
|
CD2
|
D:HIS98
|
4.4
|
23.9
|
1.0
|
C
|
D:ILE48
|
4.5
|
18.5
|
1.0
|
CA
|
D:VAL8
|
4.5
|
20.1
|
1.0
|
CA
|
D:ARG47
|
4.5
|
18.5
|
1.0
|
N
|
D:ILE48
|
4.5
|
18.2
|
1.0
|
CG
|
D:LYS49
|
4.5
|
20.9
|
1.0
|
OG
|
D:SER7
|
4.6
|
21.3
|
1.0
|
N
|
D:LYS49
|
4.6
|
19.1
|
1.0
|
CA
|
D:HIS9
|
4.6
|
20.6
|
1.0
|
C
|
D:SER7
|
4.6
|
19.2
|
1.0
|
CA
|
D:SER7
|
4.7
|
18.9
|
1.0
|
ND1
|
D:HIS98
|
4.7
|
27.4
|
1.0
|
NE
|
D:ARG47
|
4.8
|
28.3
|
1.0
|
CE1
|
D:HIS9
|
5.0
|
24.8
|
1.0
|
|
Reference:
E.Lundberg,
S.Backstrom,
U.H.Sauer,
A.E.Sauer-Eriksson.
The Transthyretin-Related Protein: Structural Investigation of A Novel Protein Family J.Struct.Biol. V. 155 445 2006.
ISSN: ISSN 1047-8477
PubMed: 16723258
DOI: 10.1016/J.JSB.2006.04.002
Page generated: Wed Jul 10 18:01:24 2024
|