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Bromine in PDB 2h05: Br Derivitation of A-Dna Octamer Gtg(Ubr)Acac

Protein crystallography data

The structure of Br Derivitation of A-Dna Octamer Gtg(Ubr)Acac, PDB code: 2h05 was solved by J.Jiang, J.Sheng, Z.Huang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.81 / 1.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 42.048, 42.048, 24.270, 90.00, 90.00, 90.00
R / Rfree (%) 21.3 / 24.8

Bromine Binding Sites:

The binding sites of Bromine atom in the Br Derivitation of A-Dna Octamer Gtg(Ubr)Acac (pdb code 2h05). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Br Derivitation of A-Dna Octamer Gtg(Ubr)Acac, PDB code: 2h05:

Bromine binding site 1 out of 1 in 2h05

Go back to Bromine Binding Sites List in 2h05
Bromine binding site 1 out of 1 in the Br Derivitation of A-Dna Octamer Gtg(Ubr)Acac


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Br Derivitation of A-Dna Octamer Gtg(Ubr)Acac within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br4

b:31.1
occ:0.95
BR A:BRU4 0.0 31.1 0.9
C5 A:BRU4 1.7 27.6 1.0
C6 A:BRU4 2.8 28.8 1.0
C4 A:BRU4 2.8 25.8 1.0
O A:HOH28 3.0 54.0 1.0
O4 A:BRU4 3.1 24.1 1.0
N7 A:DG3 3.6 29.2 1.0
C8 A:DG3 3.7 29.4 1.0
C5 A:DG3 3.7 26.4 1.0
N9 A:DG3 3.9 29.6 1.0
C4 A:DG3 3.9 27.3 1.0
C2' A:DG3 4.0 35.1 1.0
OP2 A:BRU4 4.0 36.0 1.0
C3' A:DG3 4.0 36.2 1.0
N3 A:BRU4 4.0 25.4 1.0
O A:HOH33 4.0 37.0 1.0
N1 A:BRU4 4.1 28.2 1.0
O A:HOH32 4.3 54.1 1.0
O A:HOH34 4.3 50.3 1.0
C6 A:DG3 4.4 25.1 1.0
O5' A:BRU4 4.5 35.7 1.0
O A:HOH12 4.6 37.8 1.0
C2 A:BRU4 4.6 28.2 1.0
C1' A:DG3 4.6 33.6 1.0
O A:HOH25 4.6 52.0 1.0
C5' A:DG3 4.7 37.5 1.0
N3 A:DG3 4.7 24.6 1.0
P A:BRU4 4.7 37.4 1.0
O A:HOH41 4.8 53.2 0.5
C4' A:DG3 4.9 36.5 1.0
O3' A:DG3 4.9 37.0 1.0
O6 A:DG3 5.0 24.6 1.0

Reference:

J.Jiang, J.Sheng, N.Carrasco, Z.Huang. Selenium Derivatization of Nucleic Acids For Crystallography. Nucleic Acids Res. V. 35 477 2007.
ISSN: ISSN 0305-1048
PubMed: 17169989
DOI: 10.1093/NAR/GKL1070
Page generated: Wed Jul 10 18:04:27 2024

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