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Bromine in PDB 2j19: Ferrous Chloroperoxidase (High Dose Data Set)

Enzymatic activity of Ferrous Chloroperoxidase (High Dose Data Set)

All present enzymatic activity of Ferrous Chloroperoxidase (High Dose Data Set):
1.11.1.10;

Protein crystallography data

The structure of Ferrous Chloroperoxidase (High Dose Data Set), PDB code: 2j19 was solved by T.Beitlich, K.Kuhnel, C.Schulze-Briese, R.L.Shoeman, I.Schlichting, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.75 / 1.75
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 57.730, 150.460, 100.750, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 20.4

Other elements in 2j19:

The structure of Ferrous Chloroperoxidase (High Dose Data Set) also contains other interesting chemical elements:

Manganese (Mn) 1 atom
Iron (Fe) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the Ferrous Chloroperoxidase (High Dose Data Set) (pdb code 2j19). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 3 binding sites of Bromine where determined in the Ferrous Chloroperoxidase (High Dose Data Set), PDB code: 2j19:
Jump to Bromine binding site number: 1; 2; 3;

Bromine binding site 1 out of 3 in 2j19

Go back to Bromine Binding Sites List in 2j19
Bromine binding site 1 out of 3 in the Ferrous Chloroperoxidase (High Dose Data Set)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Ferrous Chloroperoxidase (High Dose Data Set) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1318

b:27.9
occ:0.60
O A:HOH2209 3.0 29.7 1.0
N A:ALA265 3.4 17.7 1.0
O A:HOH2210 3.6 14.6 1.0
CA A:GLY264 3.7 18.6 1.0
CD A:PRO178 3.9 11.8 1.0
CG A:PRO178 3.9 12.2 1.0
CB A:LYS177 4.0 12.3 1.0
C A:GLY264 4.1 18.0 1.0
CD A:LYS177 4.2 16.6 1.0
CB A:ALA265 4.2 17.8 1.0
CA A:ALA265 4.4 17.5 1.0
CE A:LYS177 4.5 18.7 1.0
O A:PRO263 4.6 18.5 1.0
CG A:LYS177 4.7 14.0 1.0
O A:HOH2205 4.7 36.6 1.0
N A:PRO178 4.7 11.8 1.0
NZ A:LYS177 4.8 17.6 1.0
N A:GLY264 5.0 19.1 1.0
CA A:LYS177 5.0 12.3 1.0

Bromine binding site 2 out of 3 in 2j19

Go back to Bromine Binding Sites List in 2j19
Bromine binding site 2 out of 3 in the Ferrous Chloroperoxidase (High Dose Data Set)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Ferrous Chloroperoxidase (High Dose Data Set) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1319

b:19.9
occ:0.90
O A:HOH2151 3.3 31.7 1.0
O A:HOH2174 3.4 22.6 1.0
NE2 A:GLN116 3.7 15.3 1.0
CA A:GLY117 3.9 13.0 1.0
CG A:GLN116 4.0 11.8 1.0
CD2 A:LEU167 4.1 15.2 1.0
CD1 A:LEU167 4.2 14.9 1.0
N A:GLY117 4.3 12.4 1.0
CD A:GLN116 4.4 13.6 1.0
CG A:LEU167 4.5 14.2 1.0
CB A:LEU167 4.6 13.3 1.0
C A:GLN116 4.6 11.6 1.0
O A:GLN116 4.7 12.1 1.0
O A:HOH2155 4.8 20.8 1.0

Bromine binding site 3 out of 3 in 2j19

Go back to Bromine Binding Sites List in 2j19
Bromine binding site 3 out of 3 in the Ferrous Chloroperoxidase (High Dose Data Set)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Ferrous Chloroperoxidase (High Dose Data Set) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1320

b:24.0
occ:0.40
O A:HOH2063 2.5 31.5 1.0
O A:HOH2323 3.0 29.5 1.0
ND2 A:ASN93 3.1 11.0 1.0
O A:HOH2320 3.2 28.4 1.0
NE A:ARG46 3.3 10.8 1.0
O7 A:NAG1302 3.4 15.6 1.0
CD A:ARG46 3.6 9.7 1.0
CB A:ASN93 3.9 9.4 1.0
CG1 A:VAL92 4.0 13.1 1.0
CG A:ASN93 4.0 10.9 1.0
C1 A:NAG1302 4.0 12.4 1.0
CG A:ARG46 4.1 11.3 1.0
C2 A:NAG1302 4.1 13.8 1.0
O A:VAL92 4.1 9.9 1.0
O5 A:NAG1302 4.1 13.5 1.0
O A:HOH2138 4.3 23.9 1.0
CZ A:ARG46 4.4 12.1 1.0
C7 A:NAG1302 4.4 14.0 1.0
NH2 A:ARG46 4.7 14.4 1.0
C A:VAL92 4.7 10.3 1.0
N2 A:NAG1302 4.7 13.4 1.0
O A:HOH2321 5.0 30.2 1.0

Reference:

T.Beitlich, K.Kuhnel, C.Schulze-Briese, R.L.Shoeman, I.Schlichting. Cryoradiolytic Reduction of Crystalline Heme Proteins: Analysis By Uv-Vis Spectroscopy and X- Ray Crystallography J.Synchrotron Radiat. V. 14 11 2007.
ISSN: ISSN 0909-0495
PubMed: 17211068
DOI: 10.1107/S0909049506049806
Page generated: Wed Jul 10 18:10:48 2024

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