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Bromine in PDB 2ja5: Cpd Lesion Containing Rna Polymerase II Elongation Complex A

Enzymatic activity of Cpd Lesion Containing Rna Polymerase II Elongation Complex A

All present enzymatic activity of Cpd Lesion Containing Rna Polymerase II Elongation Complex A:
2.7.7.6;

Protein crystallography data

The structure of Cpd Lesion Containing Rna Polymerase II Elongation Complex A, PDB code: 2ja5 was solved by F.Brueckner, U.Hennecke, T.Carell, P.Cramer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 3.80
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 222.209, 392.206, 284.032, 90.00, 90.00, 90.00
R / Rfree (%) 27 / 28

Other elements in 2ja5:

The structure of Cpd Lesion Containing Rna Polymerase II Elongation Complex A also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 8 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Cpd Lesion Containing Rna Polymerase II Elongation Complex A (pdb code 2ja5). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Cpd Lesion Containing Rna Polymerase II Elongation Complex A, PDB code: 2ja5:

Bromine binding site 1 out of 1 in 2ja5

Go back to Bromine Binding Sites List in 2ja5
Bromine binding site 1 out of 1 in the Cpd Lesion Containing Rna Polymerase II Elongation Complex A


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Cpd Lesion Containing Rna Polymerase II Elongation Complex A within 5.0Å range:
probe atom residue distance (Å) B Occ
T:Br22

b:69.4
occ:1.00
BR T:BRU22 0.0 69.4 1.0
C5 T:BRU22 1.9 61.5 1.0
C6 T:BRU22 2.8 61.5 1.0
C4 T:BRU22 2.9 63.3 1.0
O4 T:BRU22 3.2 68.1 1.0
C5 T:DC21 3.3 74.6 1.0
C6 T:DC21 3.3 74.4 1.0
C4 T:DC21 3.9 75.3 1.0
N1 T:DC21 4.0 73.9 1.0
OP2 T:BRU22 4.0 61.2 1.0
C2' T:DC21 4.1 71.8 1.0
N1 T:BRU22 4.1 61.4 1.0
N3 T:BRU22 4.2 63.5 1.0
N3 T:DC21 4.4 74.4 1.0
N4 T:DC21 4.5 78.3 1.0
C2 T:DC21 4.5 74.3 1.0
C3' T:DC21 4.7 68.0 1.0
C1' T:DC21 4.7 72.9 1.0
C2 T:BRU22 4.7 61.8 1.0
O5' T:BRU22 4.8 59.8 1.0

Reference:

F.Brueckner, U.Hennecke, T.Carell, P.Cramer. Cpd Damage Recognition By Transcribing Rna Polymerase II Science V. 315 859 2007.
ISSN: ISSN 0036-8075
PubMed: 17290000
DOI: 10.1126/SCIENCE.1135400
Page generated: Sat Dec 12 02:06:36 2020

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