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Bromine in PDB 2ja7: Cpd Lesion Containing Rna Polymerase II Elongation Complex C

Enzymatic activity of Cpd Lesion Containing Rna Polymerase II Elongation Complex C

All present enzymatic activity of Cpd Lesion Containing Rna Polymerase II Elongation Complex C:
2.7.7.6;

Protein crystallography data

The structure of Cpd Lesion Containing Rna Polymerase II Elongation Complex C, PDB code: 2ja7 was solved by F.Brueckner, U.Hennecke, T.Carell, P.Cramer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50 / 3.8
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 394.358, 221.862, 283.105, 90.00, 90.56, 90.00
R / Rfree (%) 25.74 / 27.47

Other elements in 2ja7:

The structure of Cpd Lesion Containing Rna Polymerase II Elongation Complex C also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Zinc (Zn) 16 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Cpd Lesion Containing Rna Polymerase II Elongation Complex C (pdb code 2ja7). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Cpd Lesion Containing Rna Polymerase II Elongation Complex C, PDB code: 2ja7:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 2ja7

Go back to Bromine Binding Sites List in 2ja7
Bromine binding site 1 out of 2 in the Cpd Lesion Containing Rna Polymerase II Elongation Complex C


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Cpd Lesion Containing Rna Polymerase II Elongation Complex C within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Br22

b:69.4
occ:1.00
BR 2:BRU22 0.0 69.4 1.0
C5 2:BRU22 1.9 73.2 1.0
C6 2:BRU22 2.8 73.7 1.0
C4 2:BRU22 2.9 74.0 1.0
O4 2:BRU22 3.2 75.5 1.0
C6 2:DC21 3.2 84.8 1.0
C5 2:DC21 3.4 85.4 1.0
N1 2:DC21 3.7 83.7 1.0
C2' 2:DC21 3.7 82.2 1.0
C4 2:DC21 3.9 86.0 1.0
N1 2:BRU22 4.1 74.5 1.0
N3 2:BRU22 4.1 75.7 1.0
C2 2:DC21 4.2 84.5 1.0
C1' 2:DC21 4.2 83.0 1.0
OP1 2:BRU22 4.3 78.1 1.0
N3 2:DC21 4.3 85.2 1.0
C3' 2:DC21 4.5 81.2 1.0
N4 2:DC21 4.6 88.5 1.0
C2 2:BRU22 4.7 75.2 1.0
O5' 2:BRU22 4.8 78.4 1.0

Bromine binding site 2 out of 2 in 2ja7

Go back to Bromine Binding Sites List in 2ja7
Bromine binding site 2 out of 2 in the Cpd Lesion Containing Rna Polymerase II Elongation Complex C


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Cpd Lesion Containing Rna Polymerase II Elongation Complex C within 5.0Å range:
probe atom residue distance (Å) B Occ
5:Br22

b:77.6
occ:1.00
BR 5:BRU22 0.0 77.6 1.0
C5 5:BRU22 1.9 81.4 1.0
C4 5:BRU22 2.9 82.6 1.0
C6 5:BRU22 2.9 81.7 1.0
O4 5:BRU22 3.1 84.5 1.0
C6 5:DC21 3.2 93.7 1.0
C5 5:DC21 3.3 94.2 1.0
N1 5:DC21 3.6 92.7 1.0
C2' 5:DC21 3.8 90.4 1.0
C4 5:DC21 3.8 94.8 1.0
N3 5:BRU22 4.1 83.8 1.0
C2 5:DC21 4.1 93.7 1.0
N1 5:BRU22 4.2 82.1 1.0
N3 5:DC21 4.2 94.2 1.0
C1' 5:DC21 4.3 91.2 1.0
OP1 5:BRU22 4.5 86.7 1.0
N4 5:DC21 4.5 97.2 1.0
C3' 5:DC21 4.6 88.3 1.0
C2 5:BRU22 4.7 83.0 1.0
O2 5:DC21 5.0 93.9 1.0

Reference:

F.Brueckner, U.Hennecke, T.Carell, P.Cramer. Cpd Damage Recognition By Transcribing Rna Polymerase II. Science V. 315 859 2007.
ISSN: ISSN 0036-8075
PubMed: 17290000
DOI: 10.1126/SCIENCE.1135400
Page generated: Sat Dec 12 02:06:45 2020

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