Atomistry » Bromine » PDB 2hc0-2jkl » 2je9
Atomistry »
  Bromine »
    PDB 2hc0-2jkl »
      2je9 »

Bromine in PDB 2je9: Crystal Structure of Recombinant Dioclea Grandiflora Lectin Complexed with 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose

Protein crystallography data

The structure of Crystal Structure of Recombinant Dioclea Grandiflora Lectin Complexed with 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose, PDB code: 2je9 was solved by C.S.Nagano, L.Sanz, B.S.Cavada, J.J.Calvete, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 87.71 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 72.171, 85.153, 175.741, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 23.9

Other elements in 2je9:

The structure of Crystal Structure of Recombinant Dioclea Grandiflora Lectin Complexed with 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose also contains other interesting chemical elements:

Manganese (Mn) 4 atoms
Chlorine (Cl) 4 atoms
Calcium (Ca) 4 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of Recombinant Dioclea Grandiflora Lectin Complexed with 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose (pdb code 2je9). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 4 binding sites of Bromine where determined in the Crystal Structure of Recombinant Dioclea Grandiflora Lectin Complexed with 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose, PDB code: 2je9:
Jump to Bromine binding site number: 1; 2; 3; 4;

Bromine binding site 1 out of 4 in 2je9

Go back to Bromine Binding Sites List in 2je9
Bromine binding site 1 out of 4 in the Crystal Structure of Recombinant Dioclea Grandiflora Lectin Complexed with 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Recombinant Dioclea Grandiflora Lectin Complexed with 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1242

b:52.1
occ:1.00
BR A:XMM1242 0.0 52.1 1.0
C13 A:XMM1242 1.9 46.4 1.0
C10 A:XMM1242 2.8 42.5 1.0
C14 A:XMM1242 2.9 44.8 1.0
CL A:XMM1242 3.1 46.3 1.0
C8 A:XMM1242 4.2 39.4 1.0
C12 A:XMM1242 4.2 43.5 1.0
C9 A:XMM1242 4.7 40.3 1.0

Bromine binding site 2 out of 4 in 2je9

Go back to Bromine Binding Sites List in 2je9
Bromine binding site 2 out of 4 in the Crystal Structure of Recombinant Dioclea Grandiflora Lectin Complexed with 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of Recombinant Dioclea Grandiflora Lectin Complexed with 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br1242

b:65.1
occ:1.00
BR B:XMM1242 0.0 65.1 1.0
C13 B:XMM1242 1.9 56.4 1.0
C10 B:XMM1242 2.8 53.3 1.0
C14 B:XMM1242 2.9 54.8 1.0
CL B:XMM1242 3.0 56.6 1.0
C8 B:XMM1242 4.1 49.2 1.0
C12 B:XMM1242 4.2 51.8 1.0
C9 B:XMM1242 4.7 49.4 1.0

Bromine binding site 3 out of 4 in 2je9

Go back to Bromine Binding Sites List in 2je9
Bromine binding site 3 out of 4 in the Crystal Structure of Recombinant Dioclea Grandiflora Lectin Complexed with 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of Recombinant Dioclea Grandiflora Lectin Complexed with 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Br1242

b:69.9
occ:1.00
BR C:XMM1242 0.0 69.9 1.0
C13 C:XMM1242 1.9 65.3 1.0
C10 C:XMM1242 2.9 62.6 1.0
C14 C:XMM1242 2.9 63.6 1.0
CL C:XMM1242 3.2 64.0 1.0
C8 C:XMM1242 4.2 59.0 1.0
C12 C:XMM1242 4.2 61.1 1.0
C9 C:XMM1242 4.7 59.0 1.0

Bromine binding site 4 out of 4 in 2je9

Go back to Bromine Binding Sites List in 2je9
Bromine binding site 4 out of 4 in the Crystal Structure of Recombinant Dioclea Grandiflora Lectin Complexed with 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of Recombinant Dioclea Grandiflora Lectin Complexed with 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Br1242

b:48.5
occ:1.00
BR D:XMM1242 0.0 48.5 1.0
C13 D:XMM1242 1.9 41.8 1.0
C10 D:XMM1242 2.8 39.8 1.0
C14 D:XMM1242 2.9 40.2 1.0
CL D:XMM1242 3.1 42.9 1.0
C8 D:XMM1242 4.1 38.2 1.0
C12 D:XMM1242 4.2 39.9 1.0
C9 D:XMM1242 4.7 39.0 1.0

Reference:

C.S.Nagano, J.J.Calvete, D.Barettino, A.Perez, B.S.Cavada, L.Sanz. Insights Into the Structural Basis of the pH- Dependent Dimer-Tetramer Equilibrium Through Crystallographic Analysis of Recombinant Diocleinae Lectins. Biochem.J. V. 409 417 2008.
ISSN: ISSN 0264-6021
PubMed: 17937659
DOI: 10.1042/BJ20070942
Page generated: Sat Dec 12 02:06:45 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy