Bromine in the structure of Crystal Structure of An Rna Kissing Complex (pdb 2jlt)

The binding sites of Bromine atom in the structure of Crystal Structure of An Rna Kissing Complex (pdb code 2jlt). This binding sites where shown with 5.0 Angstroms radius around Bromine atom. The 2jlt structure was solved by C.DIPRIMO, S.FRIBOURG, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 60.1-2.9 Space group P213 a (A) 85.000 b (A) 85.000 c (A) 85.000 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 18.7 Rfree (%) 22.7 Bromine Binding Sites: Bromine binding site 1 out of 2 in 2jlt Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Bromine in the PDB 2jlt. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Bromine atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G2, A: 5bu3, A: C4, conact list: Atom Atom Distance (A) Br N9 A:G2 3.69 Br N3 A:G2 4.17 Br C3' A:G2 4.09 Br C8 A:G2 3.68 Br C2 A:G2 4.57 Br C6 A:G2 4.06 Br N1 A:G2 4.52 Br C5 A:G2 3.50 Br C1' A:G2 4.45 Br N7 A:G2 3.60 Br O3' A:G2 4.96 Br C4 A:G2 3.57 Br C2' A:G2 4.02 Br O5' A:G2 4.94 Br O6 A:G2 4.66 Br N3 A:5bu3 4.07 Br C2 A:5bu3 4.66 Br C6 A:5bu3 2.78 Br N1 A:5bu3 4.09 Br C5 A:5bu3 1.85 Br P A:5bu3 4.81 Br C4 A:5bu3 2.81 Br OP2 A:5bu3 4.13 Br BR A:5bu3 0.00 Br O5' A:5bu3 4.44 Br O4 A:5bu3 3.05 Br C6 A:C4 4.89 Br C5 A:C4 4.10 Br C4 A:C4 4.54 Br N4 A:C4 4.40 interactive model: Bromine binding site 2 out of 2 in 2jlt Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Bromine in the PDB 2jlt. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Bromine atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: C13, B: 5bu14, B: C15, conact list: Atom Atom Distance (A) Br N3 B:C13 3.55 Br C3' B:C13 4.16 Br C2 B:C13 3.61 Br C6 B:C13 3.54 Br N1 B:C13 3.61 Br C5 B:C13 3.47 Br C1' B:C13 4.45 Br O2 B:C13 4.29 Br O3' B:C13 4.91 Br C4 B:C13 3.46 Br C2' B:C13 4.09 Br N4 B:C13 4.11 Br N3 B:5bu14 4.11 Br C2 B:5bu14 4.67 Br C6 B:5bu14 2.78 Br N1 B:5bu14 4.09 Br C5 B:5bu14 1.87 Br P B:5bu14 4.60 Br C4 B:5bu14 2.85 Br OP2 B:5bu14 3.71 Br BR B:5bu14 0.00 Br O5' B:5bu14 4.33 Br O4 B:5bu14 3.14 Br C5 B:C15 4.44 Br C4 B:C15 4.90 Br N4 B:C15 4.56 interactive model: