Bromine in PDB 2jlt: Crystal Structure of An Rna Kissing Complex

The structure of Crystal Structure of An Rna Kissing Complex, PDB code: 2jlt was solved by C.Diprimo, S.Fribourg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	60.08 / 2.90
Space group	P 21 3
Cell size a, b, c (Å), α, β, γ (°)	85.000, 85.000, 85.000, 90.00, 90.00, 90.00
R / Rfree (%)	18.7 / 22.7

The binding sites of Bromine atom in the Crystal Structure of An Rna Kissing Complex (pdb code 2jlt). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of An Rna Kissing Complex, PDB code: 2jlt:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Crystal Structure of An Rna Kissing Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of An Rna Kissing Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Br3 b:31.0 occ:0.75 BR A:5BU3 0.0 31.0 0.8 C5 A:5BU3 1.9 28.9 1.0 C6 A:5BU3 2.8 29.1 1.0 C4 A:5BU3 2.8 28.6 1.0 O4 A:5BU3 3.0 27.8 1.0 C5 A:G2 3.5 25.2 1.0 C4 A:G2 3.6 24.5 1.0 N7 A:G2 3.6 25.2 1.0 C8 A:G2 3.7 24.5 1.0 N9 A:G2 3.7 24.2 1.0 C2' A:G2 4.0 23.5 1.0 C6 A:G2 4.1 26.6 1.0 N3 A:5BU3 4.1 28.6 1.0 C3' A:G2 4.1 23.2 1.0 N1 A:5BU3 4.1 28.7 1.0 C5 A:C4 4.1 28.4 1.0 OP2 A:5BU3 4.1 22.3 1.0 N3 A:G2 4.2 25.6 1.0 N4 A:C4 4.4 28.9 1.0 O5' A:5BU3 4.4 24.4 1.0 C1' A:G2 4.5 23.8 1.0 N1 A:G2 4.5 26.6 1.0 C4 A:C4 4.5 28.7 1.0 C2 A:G2 4.6 26.0 1.0 O6 A:G2 4.7 27.9 1.0 C2 A:5BU3 4.7 29.0 1.0 P A:5BU3 4.8 24.2 1.0 C6 A:C4 4.9 27.7 1.0 O5' A:G2 4.9 22.9 1.0 O3' A:G2 5.0 23.7 1.0

Bromine binding site 2 out of 2 in the Crystal Structure of An Rna Kissing Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of An Rna Kissing Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Br14 b:35.6 occ:0.75 BR B:5BU14 0.0 35.6 0.8 C5 B:5BU14 1.9 32.5 1.0 C6 B:5BU14 2.8 31.4 1.0 C4 B:5BU14 2.9 32.2 1.0 O4 B:5BU14 3.1 32.9 1.0 C4 B:C13 3.5 28.3 1.0 C5 B:C13 3.5 28.6 1.0 C6 B:C13 3.5 28.2 1.0 N3 B:C13 3.5 28.1 1.0 N1 B:C13 3.6 28.3 1.0 C2 B:C13 3.6 28.2 1.0 OP2 B:5BU14 3.7 30.1 1.0 N1 B:5BU14 4.1 30.4 1.0 C2' B:C13 4.1 29.1 1.0 N3 B:5BU14 4.1 31.6 1.0 N4 B:C13 4.1 28.6 1.0 C3' B:C13 4.2 29.6 1.0 O2 B:C13 4.3 28.5 1.0 O5' B:5BU14 4.3 29.6 1.0 C5 B:C15 4.4 22.3 1.0 C1' B:C13 4.5 29.0 1.0 N4 B:C15 4.6 23.4 1.0 P B:5BU14 4.6 30.5 1.0 C2 B:5BU14 4.7 31.4 1.0 C4 B:C15 4.9 22.3 1.0 O3' B:C13 4.9 30.1 1.0

I.Lebars, P.Legrand, A.Aime, N.Pinaud, S.Fribourg, C.Di Primo. Exploring Tar-Rna Aptamer Loop-Loop Interaction By X-Ray Crystallography, Uv Spectroscopy and Surface Plasmon Resonance. Nucleic Acids Res. V. 36 7146 2008.
ISSN: ISSN 0305-1048
PubMed: 18996893
DOI: 10.1093/NAR/GKN831