The binding sites of Bromine atom in the structure of Crystal Structure of Haloalkane Dehalogenase RV2579 From Mycobacterium Tuberculosis Complexed With 1,3-Propandiol (pdb code 2o2i). This binding sites where shown with 5.0 Angstroms radius around Bromine atom.
The 2o2i structure was solved by P.A.MAZUMDAR, J.HULECKI, M.M.CHERNEY, C.R.GAREN, M.N.G.JAMES, TBSTRUCTURAL GENOMICS CONSORTIUM (TBSGC), with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
| Resolution (A) | 36.4-1.5 | | Space group | C2221 | | a (A) | 60.820 | | b (A) | 65.190 | | c (A) | 126.090 | | alpha (°) | 90.00 | | beta (°) | 90.00 | | gamma (°) | 90.00 | | Rfactor (%) | 14.4 | | Rfree (%) | 17.6 |
|
Bromine binding site 1 out of 1 in 2o2i
| 
Click to enlarge | 
Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Bromine in the PDB 2o2i. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Bromine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asn39, A: Asp109, A: Trp110, A: Phe152, A: Phe170, A: Trp208, A: Pro209, A: Leu212, A: Hoh529, | conact list:
| Atom | Atom | Distance (A) | | Br | CB A:Asn39 | 4.04 | | Br | ND2 A:Asn39 | 3.49 | | Br | CG A:Asn39 | 4.27 | | Br | OD2 A:Asp109 | 4.81 | | Br | CD1 A:Trp110 | 3.82 | | Br | CE2 A:Trp110 | 4.66 | | Br | NE1 A:Trp110 | 3.38 | | Br | CE2 A:Phe152 | 4.10 | | Br | CD2 A:Phe152 | 4.91 | | Br | CZ A:Phe152 | 4.88 | | Br | CE2 A:Phe170 | 4.85 | | Br | CZ A:Phe170 | 3.78 | | Br | CE1 A:Phe170 | 3.90 | | Br | CB A:Trp208 | 4.02 | | Br | C A:Trp208 | 3.89 | | Br | CA A:Trp208 | 4.55 | | Br | O A:Trp208 | 4.17 | | Br | N A:Pro209 | 3.56 | | Br | CB A:Pro209 | 3.97 | | Br | CD A:Pro209 | 3.71 | | Br | CG A:Pro209 | 4.39 | | Br | CA A:Pro209 | 3.66 | | Br | CD1 A:Leu212 | 4.05 | | Br | CD2 A:Leu212 | 4.38 | | Br | CG A:Leu212 | 4.30 | | Br | O A:Hoh529 | 3.20 |
| interactive model:
|
|