Bromine in PDB 2oeu: Full-Length Hammerhead Ribozyme with Mn(II) Bound

The structure of Full-Length Hammerhead Ribozyme with Mn(II) Bound, PDB code: 2oeu was solved by M.Martick, W.G.Scott, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.80 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	50.312, 68.981, 60.443, 90.00, 112.62, 90.00
R / Rfree (%)	16.6 / 22.1

The structure of Full-Length Hammerhead Ribozyme with Mn(II) Bound also contains other interesting chemical elements:

Manganese

(Mn)

5 atoms

The binding sites of Bromine atom in the Full-Length Hammerhead Ribozyme with Mn(II) Bound (pdb code 2oeu). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Full-Length Hammerhead Ribozyme with Mn(II) Bound, PDB code: 2oeu:

Bromine binding site 1 out of 1 in the Full-Length Hammerhead Ribozyme with Mn(II) Bound


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Full-Length Hammerhead Ribozyme with Mn(II) Bound within 5.0Å range: probe atom residue distance (Å) B Occ B:Br11 b:47.6 occ:0.50 BR B:5BU11 0.0 47.6 0.5 C5 B:5BU11 1.8 42.2 1.0 O B:HOH35 2.2 36.3 1.0 C6 B:5BU11 2.8 41.0 1.0 C4 B:5BU11 2.9 43.8 1.0 O4 B:5BU11 3.2 43.0 1.0 N7 B:G10 3.5 43.2 1.0 C8 B:G10 3.6 42.2 1.0 O B:HOH21 3.6 46.7 1.0 C5 B:G10 3.6 43.0 1.0 N9 B:G10 3.7 41.6 1.0 O B:HOH87 3.7 55.1 1.0 O B:HOH82 3.8 48.3 1.0 C4 B:G10 3.8 42.8 1.0 OP2 B:5BU11 4.0 39.4 1.0 C3' B:G10 4.1 42.1 1.0 N1 B:5BU11 4.1 44.0 1.0 N3 B:5BU11 4.1 41.9 1.0 C6 B:G10 4.3 43.5 1.0 C2' B:G10 4.5 41.7 1.0 C1' B:G10 4.5 42.9 1.0 N3 B:G10 4.5 42.7 1.0 O5' B:5BU11 4.6 42.4 1.0 C5' B:G10 4.6 45.1 1.0 C2 B:5BU11 4.7 43.4 1.0 N7 B:A12 4.7 42.2 1.0 P B:5BU11 4.8 42.7 1.0 O6 B:G10 4.9 41.8 1.0 C4' B:G10 4.9 43.3 1.0 N1 B:G10 4.9 42.2 1.0 O3' B:G10 5.0 41.2 1.0 C2 B:G10 5.0 43.1 1.0

M.Martick, T.S.Lee, D.M.York, W.G.Scott. Solvent Structure and Hammerhead Ribozyme Catalysis. Chem.Biol. V. 15 332 2008.
ISSN: ISSN 1074-5521
PubMed: 18420140
DOI: 10.1016/J.CHEMBIOL.2008.03.010