Atomistry » Bromine » PDB 2jlt-2qbs » 2pn3
Atomistry »
  Bromine »
    PDB 2jlt-2qbs »
      2pn3 »

Bromine in PDB 2pn3: Crystal Structure of Hepatitis C Virus Ires Subdomain Iia

Protein crystallography data

The structure of Crystal Structure of Hepatitis C Virus Ires Subdomain Iia, PDB code: 2pn3 was solved by Q.Zhao, Q.Han, C.R.Kissinger, T.Hermann, P.A.Thompson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.00 / 2.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 48.945, 48.945, 120.942, 90.00, 90.00, 90.00
R / Rfree (%) 22.9 / 28.3

Other elements in 2pn3:

The structure of Crystal Structure of Hepatitis C Virus Ires Subdomain Iia also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of Hepatitis C Virus Ires Subdomain Iia (pdb code 2pn3). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of Hepatitis C Virus Ires Subdomain Iia, PDB code: 2pn3:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 2pn3

Go back to Bromine Binding Sites List in 2pn3
Bromine binding site 1 out of 2 in the Crystal Structure of Hepatitis C Virus Ires Subdomain Iia


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Hepatitis C Virus Ires Subdomain Iia within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br101

b:84.1
occ:1.00
BR B:5BU101 0.0 84.1 1.0
C5 B:5BU101 1.9 82.1 1.0
C6 B:5BU101 2.8 81.6 1.0
C4 B:5BU101 2.9 81.9 1.0
O4 B:5BU101 3.1 81.9 1.0
N7 B:G100 3.4 63.3 1.0
C5 B:G100 3.7 63.4 1.0
C8 B:G100 3.7 63.8 1.0
N3 B:5BU101 4.1 82.2 1.0
N1 B:5BU101 4.1 81.9 1.0
C4 B:G100 4.1 63.7 1.0
N9 B:G100 4.1 64.1 1.0
C6 B:G100 4.2 63.6 1.0
OP2 B:5BU101 4.3 71.1 1.0
C3' B:G100 4.4 67.0 1.0
O6 B:G100 4.5 64.2 1.0
C2 B:5BU101 4.7 82.3 1.0
N7 B:G102 4.7 76.8 1.0
C5' B:G100 4.8 66.4 1.0
O5' B:5BU101 4.8 72.4 1.0
N3 B:G100 5.0 63.8 1.0
N1 B:G100 5.0 63.6 1.0

Bromine binding site 2 out of 2 in 2pn3

Go back to Bromine Binding Sites List in 2pn3
Bromine binding site 2 out of 2 in the Crystal Structure of Hepatitis C Virus Ires Subdomain Iia


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of Hepatitis C Virus Ires Subdomain Iia within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br113

b:47.4
occ:1.00
BR B:5BU113 0.0 47.4 1.0
C5 B:5BU113 1.9 43.2 1.0
C6 B:5BU113 2.8 42.0 1.0
C4 B:5BU113 2.9 42.0 1.0
O4 B:5BU113 3.2 41.5 1.0
C4 B:C112 3.5 24.4 1.0
N3 B:C112 3.6 25.4 1.0
C5 B:C112 3.7 24.2 1.0
C2 B:C112 3.7 24.3 1.0
C6 B:C112 3.7 23.6 1.0
N1 B:C112 3.8 23.1 1.0
OP2 B:5BU113 4.0 24.3 1.0
C2' B:C112 4.1 23.0 1.0
N1 B:5BU113 4.1 41.3 1.0
N3 B:5BU113 4.1 43.4 1.0
N4 B:C112 4.2 24.7 1.0
C3' B:C112 4.2 22.0 1.0
O2 B:C112 4.3 25.1 1.0
O5' B:5BU113 4.3 23.7 1.0
C1' B:C112 4.5 23.6 1.0
C2 B:5BU113 4.7 43.6 1.0
P B:5BU113 4.7 23.3 1.0
N4 B:C114 4.7 24.0 1.0
C5 B:C114 4.9 22.8 1.0
O4' B:5BU113 4.9 33.6 1.0
O3' B:C112 5.0 22.2 1.0

Reference:

Q.Zhao, Q.Han, C.R.Kissinger, T.Hermann, P.A.Thompson. Structure of Hepatitis C Virus Ires Subdomain Iia. Acta Crystallogr.,Sect.D V. 64 436 2008.
ISSN: ISSN 0907-4449
PubMed: 18391410
DOI: 10.1107/S0907444908002011
Page generated: Sat Dec 12 02:07:36 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy